Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1661 and HP15_1662 are separated by 58 nucleotides HP15_1662 and HP15_1663 are separated by 321 nucleotides HP15_1663 and HP15_1664 are separated by 117 nucleotides HP15_1664 and HP15_1665 are separated by 103 nucleotides
HP15_1661: HP15_1661 - hydrolase-like protein, at 1,754,220 to 1,754,540
_1661
HP15_1662: HP15_1662 - conserved hypothetical protein, secreted, at 1,754,599 to 1,754,850
_1662
HP15_1663: HP15_1663 - conserved hypothetical protein, at 1,755,172 to 1,756,167
_1663
HP15_1664: HP15_1664 - thioredoxin, at 1,756,285 to 1,756,608
_1664
HP15_1665: HP15_1665 - transcriptional regulator, LysR family, at 1,756,712 to 1,757,665
_1665
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1754.289 kb on + strand, within HP15_1661 at 1754.412 kb on + strand, within HP15_1661 at 1754.417 kb on + strand, within HP15_1661 at 1754.465 kb on - strand, within HP15_1661 at 1754.465 kb on - strand, within HP15_1661 at 1754.548 kb on - strand at 1754.585 kb on - strand at 1754.653 kb on - strand, within HP15_1662 at 1754.668 kb on - strand, within HP15_1662 at 1754.668 kb on - strand, within HP15_1662 at 1754.730 kb on - strand, within HP15_1662 at 1754.743 kb on - strand, within HP15_1662 at 1754.929 kb on + strand at 1754.929 kb on + strand at 1754.934 kb on + strand at 1755.004 kb on - strand at 1755.249 kb on + strand at 1755.347 kb on - strand, within HP15_1663 at 1755.350 kb on + strand, within HP15_1663 at 1755.363 kb on - strand, within HP15_1663 at 1755.365 kb on + strand, within HP15_1663 at 1755.365 kb on + strand, within HP15_1663 at 1755.481 kb on + strand, within HP15_1663 at 1755.512 kb on + strand, within HP15_1663 at 1755.520 kb on - strand, within HP15_1663 at 1755.585 kb on - strand, within HP15_1663 at 1755.599 kb on + strand, within HP15_1663 at 1755.631 kb on + strand, within HP15_1663 at 1755.631 kb on + strand, within HP15_1663 at 1755.633 kb on - strand, within HP15_1663 at 1755.633 kb on - strand, within HP15_1663 at 1755.642 kb on + strand, within HP15_1663 at 1755.650 kb on + strand, within HP15_1663 at 1755.858 kb on + strand, within HP15_1663 at 1756.026 kb on + strand, within HP15_1663 at 1756.131 kb on + strand at 1756.131 kb on + strand at 1756.139 kb on - strand at 1756.139 kb on - strand at 1756.202 kb on + strand at 1756.282 kb on + strand at 1756.283 kb on - strand at 1756.328 kb on + strand, within HP15_1664 at 1756.328 kb on + strand, within HP15_1664 at 1756.330 kb on + strand, within HP15_1664 at 1756.333 kb on + strand, within HP15_1664 at 1756.336 kb on - strand, within HP15_1664 at 1756.338 kb on - strand, within HP15_1664 at 1756.340 kb on + strand, within HP15_1664 at 1756.346 kb on + strand, within HP15_1664 at 1756.354 kb on - strand, within HP15_1664 at 1756.376 kb on + strand, within HP15_1664 at 1756.462 kb on + strand, within HP15_1664 at 1756.524 kb on + strand, within HP15_1664 at 1756.538 kb on - strand, within HP15_1664 at 1756.610 kb on + strand at 1756.727 kb on + strand at 1756.779 kb on + strand at 1756.881 kb on - strand, within HP15_1665 at 1756.901 kb on - strand, within HP15_1665 at 1756.941 kb on - strand, within HP15_1665 at 1756.967 kb on - strand, within HP15_1665 at 1757.083 kb on + strand, within HP15_1665 at 1757.093 kb on - strand, within HP15_1665 at 1757.123 kb on + strand, within HP15_1665 at 1757.131 kb on - strand, within HP15_1665 at 1757.143 kb on - strand, within HP15_1665
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 1,754,289 + HP15_1661 0.21 +1.1 1,754,412 + HP15_1661 0.60 +1.0 1,754,417 + HP15_1661 0.61 +0.7 1,754,465 - HP15_1661 0.76 +0.4 1,754,465 - HP15_1661 0.76 +0.8 1,754,548 - -0.8 1,754,585 - +0.8 1,754,653 - HP15_1662 0.21 -0.3 1,754,668 - HP15_1662 0.27 +0.2 1,754,668 - HP15_1662 0.27 -0.9 1,754,730 - HP15_1662 0.52 +0.6 1,754,743 - HP15_1662 0.57 +0.4 1,754,929 + +0.0 1,754,929 + +0.3 1,754,934 + +0.9 1,755,004 - +0.5 1,755,249 + -1.3 1,755,347 - HP15_1663 0.18 +0.5 1,755,350 + HP15_1663 0.18 -1.4 1,755,363 - HP15_1663 0.19 -1.8 1,755,365 + HP15_1663 0.19 +0.9 1,755,365 + HP15_1663 0.19 -0.7 1,755,481 + HP15_1663 0.31 +0.6 1,755,512 + HP15_1663 0.34 -1.2 1,755,520 - HP15_1663 0.35 -0.8 1,755,585 - HP15_1663 0.41 -0.8 1,755,599 + HP15_1663 0.43 -0.0 1,755,631 + HP15_1663 0.46 +1.1 1,755,631 + HP15_1663 0.46 +0.5 1,755,633 - HP15_1663 0.46 -1.4 1,755,633 - HP15_1663 0.46 -1.2 1,755,642 + HP15_1663 0.47 -1.2 1,755,650 + HP15_1663 0.48 -1.0 1,755,858 + HP15_1663 0.69 -2.1 1,756,026 + HP15_1663 0.86 -2.5 1,756,131 + -1.2 1,756,131 + -2.0 1,756,139 - -1.2 1,756,139 - -1.2 1,756,202 + -0.6 1,756,282 + -2.5 1,756,283 - -0.8 1,756,328 + HP15_1664 0.13 +1.9 1,756,328 + HP15_1664 0.13 +1.1 1,756,330 + HP15_1664 0.14 -1.1 1,756,333 + HP15_1664 0.15 +2.7 1,756,336 - HP15_1664 0.16 +1.1 1,756,338 - HP15_1664 0.16 -0.1 1,756,340 + HP15_1664 0.17 +2.1 1,756,346 + HP15_1664 0.19 +0.3 1,756,354 - HP15_1664 0.21 -1.1 1,756,376 + HP15_1664 0.28 +0.7 1,756,462 + HP15_1664 0.55 +1.1 1,756,524 + HP15_1664 0.74 +1.1 1,756,538 - HP15_1664 0.78 -0.6 1,756,610 + +0.1 1,756,727 + -1.8 1,756,779 + -0.9 1,756,881 - HP15_1665 0.18 -2.1 1,756,901 - HP15_1665 0.20 -1.7 1,756,941 - HP15_1665 0.24 -2.1 1,756,967 - HP15_1665 0.27 -2.0 1,757,083 + HP15_1665 0.39 -0.9 1,757,093 - HP15_1665 0.40 -0.8 1,757,123 + HP15_1665 0.43 -1.2 1,757,131 - HP15_1665 0.44 -2.7 1,757,143 - HP15_1665 0.45 -2.4
Or see this region's nucleotide sequence