Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1636 and HP15_1637 are separated by 115 nucleotides HP15_1637 and HP15_1638 are separated by 85 nucleotides HP15_1638 and HP15_1639 are separated by 5 nucleotides HP15_1639 and HP15_1640 are separated by 181 nucleotides
HP15_1636: HP15_1636 - NADP-dependent isocitrate dehydrogenase-like protein, at 1,736,284 to 1,738,002
_1636
HP15_1637: HP15_1637 - methyl-accepting chemotaxis sensory transducer, at 1,738,118 to 1,738,555
_1637
HP15_1638: HP15_1638 - protein containing pyridoxamine 5'-phosphate oxidase-related, FMN-binding core domain, at 1,738,641 to 1,739,210
_1638
HP15_1639: HP15_1639 - MarR family transcriptional regulator-like protein, at 1,739,216 to 1,739,677
_1639
HP15_1640: HP15_1640 - transcriptional regulator, LysR family protein, at 1,739,859 to 1,740,839
_1640
Position (kb)
1738
1739
1740 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1737.649 kb on - strand, within HP15_1636 at 1737.706 kb on + strand, within HP15_1636 at 1737.706 kb on + strand, within HP15_1636 at 1737.714 kb on - strand, within HP15_1636 at 1737.727 kb on - strand, within HP15_1636 at 1737.753 kb on + strand, within HP15_1636 at 1737.806 kb on - strand, within HP15_1636 at 1737.817 kb on - strand, within HP15_1636 at 1737.864 kb on + strand at 1737.872 kb on - strand at 1737.968 kb on + strand at 1738.063 kb on + strand at 1738.069 kb on - strand at 1738.102 kb on - strand at 1738.109 kb on - strand at 1738.176 kb on - strand, within HP15_1637 at 1738.176 kb on - strand, within HP15_1637 at 1738.279 kb on + strand, within HP15_1637 at 1738.315 kb on + strand, within HP15_1637 at 1738.402 kb on - strand, within HP15_1637 at 1738.533 kb on - strand at 1738.538 kb on - strand at 1738.572 kb on + strand at 1738.572 kb on + strand at 1738.572 kb on + strand at 1738.580 kb on - strand at 1738.580 kb on - strand at 1738.590 kb on - strand at 1738.698 kb on + strand, within HP15_1638 at 1738.777 kb on + strand, within HP15_1638 at 1738.867 kb on + strand, within HP15_1638 at 1739.009 kb on + strand, within HP15_1638 at 1739.040 kb on - strand, within HP15_1638 at 1739.112 kb on - strand, within HP15_1638 at 1739.141 kb on + strand, within HP15_1638 at 1739.141 kb on + strand, within HP15_1638 at 1739.143 kb on + strand, within HP15_1638 at 1739.149 kb on - strand, within HP15_1638 at 1739.151 kb on - strand, within HP15_1638 at 1739.157 kb on - strand at 1739.180 kb on + strand at 1739.266 kb on + strand, within HP15_1639 at 1739.496 kb on - strand, within HP15_1639 at 1739.537 kb on - strand, within HP15_1639 at 1739.539 kb on + strand, within HP15_1639 at 1739.759 kb on - strand at 1739.894 kb on - strand at 1739.957 kb on - strand, within HP15_1640 at 1740.056 kb on - strand, within HP15_1640
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 1,737,649 - HP15_1636 0.79 +2.7 1,737,706 + HP15_1636 0.83 +0.1 1,737,706 + HP15_1636 0.83 -0.9 1,737,714 - HP15_1636 0.83 +1.0 1,737,727 - HP15_1636 0.84 -1.0 1,737,753 + HP15_1636 0.85 +0.8 1,737,806 - HP15_1636 0.89 -2.9 1,737,817 - HP15_1636 0.89 -0.2 1,737,864 + -0.2 1,737,872 - -1.5 1,737,968 + -3.2 1,738,063 + -0.5 1,738,069 - +1.6 1,738,102 - +1.1 1,738,109 - -2.7 1,738,176 - HP15_1637 0.13 +0.8 1,738,176 - HP15_1637 0.13 -1.0 1,738,279 + HP15_1637 0.37 -0.1 1,738,315 + HP15_1637 0.45 -1.0 1,738,402 - HP15_1637 0.65 -0.1 1,738,533 - -0.0 1,738,538 - +0.3 1,738,572 + -1.0 1,738,572 + -0.4 1,738,572 + +0.5 1,738,580 - +1.1 1,738,580 - -0.0 1,738,590 - +0.8 1,738,698 + HP15_1638 0.10 +0.1 1,738,777 + HP15_1638 0.24 -1.2 1,738,867 + HP15_1638 0.40 -0.8 1,739,009 + HP15_1638 0.65 -0.2 1,739,040 - HP15_1638 0.70 +0.9 1,739,112 - HP15_1638 0.83 -2.4 1,739,141 + HP15_1638 0.88 -0.4 1,739,141 + HP15_1638 0.88 +0.1 1,739,143 + HP15_1638 0.88 -1.1 1,739,149 - HP15_1638 0.89 -0.8 1,739,151 - HP15_1638 0.89 -0.7 1,739,157 - +0.3 1,739,180 + +0.5 1,739,266 + HP15_1639 0.11 -1.9 1,739,496 - HP15_1639 0.61 +0.4 1,739,537 - HP15_1639 0.69 +1.6 1,739,539 + HP15_1639 0.70 +0.4 1,739,759 - +0.1 1,739,894 - -0.6 1,739,957 - HP15_1640 0.10 +0.0 1,740,056 - HP15_1640 0.20 -0.4
Or see this region's nucleotide sequence