Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1610 and HP15_1611 are separated by 56 nucleotides HP15_1611 and HP15_1612 are separated by 26 nucleotides HP15_1612 and HP15_1613 are separated by 38 nucleotides
HP15_1610: HP15_1610 - general secretion pathway protein M, at 1,706,125 to 1,706,655
_1610
HP15_1611: HP15_1611 - GCN5-related N-acetyltransferase, at 1,706,712 to 1,707,383
_1611
HP15_1612: HP15_1612 - protein containing FAD-dependent pyridine nucleotide-disulfide oxidoreductase / Pyridine nucleotide-disulfide oxidoreductase, dimerization, at 1,707,410 to 1,708,771
_1612
HP15_1613: HP15_1613 - sensory box histidine kinase/response regulator, at 1,708,810 to 1,710,753
_1613
Position (kb)
1707
1708
1709 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1706.531 kb on + strand, within HP15_1610 at 1706.596 kb on + strand, within HP15_1610 at 1706.604 kb on - strand at 1706.799 kb on - strand, within HP15_1611 at 1707.033 kb on + strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.053 kb on - strand, within HP15_1611 at 1707.486 kb on - strand at 1707.515 kb on + strand at 1707.651 kb on + strand, within HP15_1612 at 1707.944 kb on + strand, within HP15_1612 at 1707.952 kb on - strand, within HP15_1612 at 1707.981 kb on + strand, within HP15_1612 at 1708.148 kb on + strand, within HP15_1612 at 1708.173 kb on + strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.229 kb on - strand, within HP15_1612 at 1708.285 kb on + strand, within HP15_1612 at 1708.321 kb on - strand, within HP15_1612 at 1708.356 kb on + strand, within HP15_1612 at 1708.366 kb on + strand, within HP15_1612 at 1708.381 kb on - strand, within HP15_1612 at 1708.521 kb on - strand, within HP15_1612 at 1708.707 kb on - strand at 1708.815 kb on + strand at 1708.862 kb on + strand at 1708.870 kb on - strand at 1709.006 kb on - strand, within HP15_1613 at 1709.051 kb on - strand, within HP15_1613 at 1709.069 kb on + strand, within HP15_1613 at 1709.074 kb on + strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.293 kb on - strand, within HP15_1613 at 1709.303 kb on - strand, within HP15_1613 at 1709.327 kb on + strand, within HP15_1613 at 1709.355 kb on + strand, within HP15_1613 at 1709.411 kb on - strand, within HP15_1613 at 1709.615 kb on - strand, within HP15_1613 at 1709.664 kb on - strand, within HP15_1613 at 1709.716 kb on + strand, within HP15_1613 at 1709.760 kb on - strand, within HP15_1613
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 1,706,531 + HP15_1610 0.76 +0.1 1,706,596 + HP15_1610 0.89 -0.1 1,706,604 - +1.2 1,706,799 - HP15_1611 0.13 +0.9 1,707,033 + HP15_1611 0.48 -1.6 1,707,053 - HP15_1611 0.51 +1.1 1,707,053 - HP15_1611 0.51 -2.5 1,707,486 - +2.5 1,707,515 + +3.7 1,707,651 + HP15_1612 0.18 +3.5 1,707,944 + HP15_1612 0.39 +2.8 1,707,952 - HP15_1612 0.40 +2.5 1,707,981 + HP15_1612 0.42 +2.4 1,708,148 + HP15_1612 0.54 +2.0 1,708,173 + HP15_1612 0.56 +4.0 1,708,229 - HP15_1612 0.60 +2.9 1,708,229 - HP15_1612 0.60 +4.7 1,708,285 + HP15_1612 0.64 +2.2 1,708,321 - HP15_1612 0.67 +1.5 1,708,356 + HP15_1612 0.69 +0.4 1,708,366 + HP15_1612 0.70 +2.7 1,708,381 - HP15_1612 0.71 +2.7 1,708,521 - HP15_1612 0.82 +2.9 1,708,707 - +1.6 1,708,815 + +0.8 1,708,862 + -0.6 1,708,870 - -0.2 1,709,006 - HP15_1613 0.10 -1.1 1,709,051 - HP15_1613 0.12 -0.9 1,709,069 + HP15_1613 0.13 +0.1 1,709,074 + HP15_1613 0.14 -0.3 1,709,293 - HP15_1613 0.25 -0.1 1,709,293 - HP15_1613 0.25 -1.2 1,709,293 - HP15_1613 0.25 -0.1 1,709,303 - HP15_1613 0.25 +0.1 1,709,327 + HP15_1613 0.27 -0.2 1,709,355 + HP15_1613 0.28 +1.1 1,709,411 - HP15_1613 0.31 -0.2 1,709,615 - HP15_1613 0.41 +0.3 1,709,664 - HP15_1613 0.44 +1.3 1,709,716 + HP15_1613 0.47 -2.2 1,709,760 - HP15_1613 0.49 +0.1
Or see this region's nucleotide sequence