Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1565 and HP15_1566 are separated by 84 nucleotides HP15_1566 and HP15_1567 are separated by 99 nucleotides HP15_1567 and HP15_1568 overlap by 17 nucleotides
HP15_1565: HP15_1565 - methyl-accepting chemotaxis sensory transducer, at 1,644,922 to 1,646,541
_1565
HP15_1566: HP15_1566 - conserved hypothetical protein, at 1,646,626 to 1,646,877
_1566
HP15_1567: HP15_1567 - two component transcriptional regulator, LuxR family, at 1,646,977 to 1,647,639
_1567
HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485
_1568
Position (kb)
1646
1647 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1645.645 kb on + strand, within HP15_1565 at 1645.740 kb on + strand, within HP15_1565 at 1645.758 kb on + strand, within HP15_1565 at 1645.817 kb on - strand, within HP15_1565 at 1645.851 kb on + strand, within HP15_1565 at 1646.017 kb on - strand, within HP15_1565 at 1646.017 kb on - strand, within HP15_1565 at 1646.065 kb on + strand, within HP15_1565 at 1646.106 kb on - strand, within HP15_1565 at 1646.144 kb on - strand, within HP15_1565 at 1646.167 kb on - strand, within HP15_1565 at 1646.178 kb on - strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.191 kb on + strand, within HP15_1565 at 1646.199 kb on - strand, within HP15_1565 at 1646.199 kb on - strand, within HP15_1565 at 1646.291 kb on - strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.295 kb on + strand, within HP15_1565 at 1646.303 kb on - strand, within HP15_1565 at 1646.738 kb on + strand, within HP15_1566 at 1646.741 kb on - strand, within HP15_1566 at 1646.757 kb on + strand, within HP15_1566 at 1646.772 kb on + strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.795 kb on - strand, within HP15_1566 at 1646.800 kb on - strand, within HP15_1566 at 1646.877 kb on + strand at 1646.895 kb on + strand at 1646.982 kb on - strand at 1647.010 kb on - strand at 1647.498 kb on - strand, within HP15_1567 at 1647.498 kb on - strand, within HP15_1567 at 1647.509 kb on + strand, within HP15_1567
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 1,645,645 + HP15_1565 0.45 -0.2 1,645,740 + HP15_1565 0.50 +0.1 1,645,758 + HP15_1565 0.52 -1.0 1,645,817 - HP15_1565 0.55 +1.3 1,645,851 + HP15_1565 0.57 +0.2 1,646,017 - HP15_1565 0.68 +1.1 1,646,017 - HP15_1565 0.68 +1.2 1,646,065 + HP15_1565 0.71 -0.4 1,646,106 - HP15_1565 0.73 -1.1 1,646,144 - HP15_1565 0.75 +1.1 1,646,167 - HP15_1565 0.77 +0.3 1,646,178 - HP15_1565 0.78 -0.8 1,646,191 + HP15_1565 0.78 -0.8 1,646,191 + HP15_1565 0.78 +1.0 1,646,191 + HP15_1565 0.78 +1.6 1,646,191 + HP15_1565 0.78 -2.2 1,646,199 - HP15_1565 0.79 +0.2 1,646,199 - HP15_1565 0.79 +1.4 1,646,291 - HP15_1565 0.85 -2.3 1,646,295 + HP15_1565 0.85 -1.2 1,646,295 + HP15_1565 0.85 -0.5 1,646,295 + HP15_1565 0.85 +1.1 1,646,303 - HP15_1565 0.85 +0.1 1,646,738 + HP15_1566 0.44 -1.4 1,646,741 - HP15_1566 0.46 +0.5 1,646,757 + HP15_1566 0.52 +0.4 1,646,772 + HP15_1566 0.58 -0.5 1,646,780 - HP15_1566 0.61 -0.5 1,646,780 - HP15_1566 0.61 +0.7 1,646,795 - HP15_1566 0.67 +1.1 1,646,800 - HP15_1566 0.69 -1.7 1,646,877 + +0.6 1,646,895 + +0.7 1,646,982 - +2.5 1,647,010 - -1.1 1,647,498 - HP15_1567 0.79 +0.1 1,647,498 - HP15_1567 0.79 -0.9 1,647,509 + HP15_1567 0.80 +0.5
Or see this region's nucleotide sequence