Strain Fitness in Marinobacter adhaerens HP15 around HP15_1531

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1530 and HP15_1531 are separated by 3 nucleotidesHP15_1531 and HP15_1532 are separated by 284 nucleotidesHP15_1532 and HP15_1533 are separated by 1 nucleotides HP15_1530: HP15_1530 - RNA-binding S4 domain protein, at 1,611,607 to 1,612,590 _1530 HP15_1531: HP15_1531 - diguanylate cyclase (GGDEF domain), at 1,612,594 to 1,613,520 _1531 HP15_1532: HP15_1532 - transcriptional regulator, GntR family, at 1,613,805 to 1,614,488 _1532 HP15_1533: HP15_1533 - chromosome segregation protein SMC, at 1,614,490 to 1,617,984 _1533 Position (kb) 1612 1613 1614Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1611.643 kb on + strandat 1611.676 kb on - strandat 1611.853 kb on + strand, within HP15_1530at 1611.853 kb on + strand, within HP15_1530at 1611.911 kb on + strand, within HP15_1530at 1612.092 kb on - strand, within HP15_1530at 1612.587 kb on - strandat 1612.587 kb on - strandat 1612.624 kb on + strandat 1612.624 kb on + strandat 1612.630 kb on + strandat 1612.638 kb on - strandat 1612.678 kb on + strandat 1612.791 kb on + strand, within HP15_1531at 1612.812 kb on + strand, within HP15_1531at 1612.932 kb on + strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1612.966 kb on - strand, within HP15_1531at 1613.205 kb on + strand, within HP15_1531at 1613.247 kb on + strand, within HP15_1531at 1613.264 kb on - strand, within HP15_1531at 1613.266 kb on + strand, within HP15_1531at 1613.357 kb on - strand, within HP15_1531at 1613.707 kb on - strandat 1613.707 kb on - strandat 1613.717 kb on - strandat 1614.407 kb on + strand, within HP15_1532

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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1,611,643 + -0.8
1,611,676 - -3.2
1,611,853 + HP15_1530 0.25 -0.3
1,611,853 + HP15_1530 0.25 -2.8
1,611,911 + HP15_1530 0.31 -3.0
1,612,092 - HP15_1530 0.49 -1.9
1,612,587 - +1.4
1,612,587 - -0.1
1,612,624 + +1.7
1,612,624 + +0.6
1,612,630 + +1.2
1,612,638 - +1.5
1,612,678 + -2.4
1,612,791 + HP15_1531 0.21 -0.4
1,612,812 + HP15_1531 0.24 +0.1
1,612,932 + HP15_1531 0.36 -0.8
1,612,966 - HP15_1531 0.40 -2.1
1,612,966 - HP15_1531 0.40 -0.2
1,612,966 - HP15_1531 0.40 -0.4
1,613,205 + HP15_1531 0.66 +0.8
1,613,247 + HP15_1531 0.70 -0.3
1,613,264 - HP15_1531 0.72 -0.1
1,613,266 + HP15_1531 0.72 -0.6
1,613,357 - HP15_1531 0.82 -0.8
1,613,707 - +0.9
1,613,707 - +0.2
1,613,717 - +2.2
1,614,407 + HP15_1532 0.88 -1.7

Or see this region's nucleotide sequence