Strain Fitness in Marinobacter adhaerens HP15 around HP15_1162

Experiment: m.b. methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1160 and HP15_1161 are separated by 87 nucleotidesHP15_1161 and HP15_1162 overlap by 4 nucleotidesHP15_1162 and HP15_1163 overlap by 4 nucleotides HP15_1160: HP15_1160 - tetrahydrodipicolinate succinylase, at 1,192,625 to 1,193,653 _1160 HP15_1161: HP15_1161 - arsenate reductase, at 1,193,741 to 1,194,082 _1161 HP15_1162: HP15_1162 - aminotransferase, class I and II, at 1,194,079 to 1,195,281 _1162 HP15_1163: HP15_1163 - [protein-PII] uridylyltransferase, at 1,195,278 to 1,197,923 _1163 Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -2 -1 0 1 2at 1193.767 kb on - strandat 1193.856 kb on - strand, within HP15_1161at 1193.893 kb on - strand, within HP15_1161at 1193.920 kb on + strand, within HP15_1161at 1193.972 kb on + strand, within HP15_1161at 1194.237 kb on + strand, within HP15_1162at 1194.582 kb on - strand, within HP15_1162at 1194.636 kb on + strand, within HP15_1162at 1194.858 kb on - strand, within HP15_1162at 1194.930 kb on + strand, within HP15_1162at 1194.957 kb on - strand, within HP15_1162at 1195.087 kb on - strand, within HP15_1162at 1195.700 kb on + strand, within HP15_1163at 1195.708 kb on - strand, within HP15_1163at 1195.715 kb on + strand, within HP15_1163at 1195.802 kb on - strand, within HP15_1163at 1196.067 kb on + strand, within HP15_1163at 1196.075 kb on + strand, within HP15_1163at 1196.086 kb on + strand, within HP15_1163at 1196.120 kb on - strand, within HP15_1163at 1196.157 kb on - strand, within HP15_1163at 1196.279 kb on + strand, within HP15_1163

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
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1,193,767 - +0.7
1,193,856 - HP15_1161 0.34 -0.3
1,193,893 - HP15_1161 0.44 -1.1
1,193,920 + HP15_1161 0.52 +0.7
1,193,972 + HP15_1161 0.68 +0.2
1,194,237 + HP15_1162 0.13 -0.7
1,194,582 - HP15_1162 0.42 -0.6
1,194,636 + HP15_1162 0.46 -0.6
1,194,858 - HP15_1162 0.65 -1.8
1,194,930 + HP15_1162 0.71 -0.4
1,194,957 - HP15_1162 0.73 +0.1
1,195,087 - HP15_1162 0.84 -0.5
1,195,700 + HP15_1163 0.16 +1.5
1,195,708 - HP15_1163 0.16 +0.7
1,195,715 + HP15_1163 0.17 +0.4
1,195,802 - HP15_1163 0.20 +0.3
1,196,067 + HP15_1163 0.30 +2.0
1,196,075 + HP15_1163 0.30 +2.5
1,196,086 + HP15_1163 0.31 +1.2
1,196,120 - HP15_1163 0.32 +1.3
1,196,157 - HP15_1163 0.33 +1.6
1,196,279 + HP15_1163 0.38 +0.7

Or see this region's nucleotide sequence