Strain Fitness in Marinobacter adhaerens HP15 around HP15_1106

Experiment: m.b. methylglyoxal 0.008 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1105 and HP15_1106 are separated by 458 nucleotidesHP15_1106 and HP15_1107 are separated by 594 nucleotides HP15_1105: HP15_1105 - hypothetical protein, at 1,132,165 to 1,132,290 _1105 HP15_1106: HP15_1106 - Rieske (2Fe-2S) domain protein, at 1,132,749 to 1,133,993 _1106 HP15_1107: HP15_1107 - oxidoreductase FAD/NAD(P)-binding domain protein, at 1,134,588 to 1,135,604 _1107 Position (kb) 1132 1133 1134Strain fitness (log2 ratio) -2 -1 0 1 2at 1131.765 kb on + strandat 1131.774 kb on - strandat 1131.786 kb on - strandat 1131.801 kb on - strandat 1131.814 kb on + strandat 1131.820 kb on - strandat 1131.873 kb on + strandat 1131.952 kb on - strandat 1131.987 kb on + strandat 1132.044 kb on - strandat 1132.080 kb on + strandat 1132.082 kb on + strandat 1132.088 kb on - strandat 1132.090 kb on - strandat 1132.220 kb on + strand, within HP15_1105at 1132.230 kb on + strand, within HP15_1105at 1132.283 kb on + strandat 1132.293 kb on + strandat 1132.310 kb on + strandat 1132.321 kb on - strandat 1132.370 kb on - strandat 1132.955 kb on + strand, within HP15_1106at 1133.092 kb on - strand, within HP15_1106at 1133.094 kb on + strand, within HP15_1106at 1133.363 kb on - strand, within HP15_1106at 1133.446 kb on + strand, within HP15_1106at 1133.731 kb on - strand, within HP15_1106at 1133.782 kb on + strand, within HP15_1106at 1133.827 kb on + strand, within HP15_1106at 1133.830 kb on - strand, within HP15_1106at 1133.907 kb on - strandat 1134.127 kb on - strandat 1134.201 kb on + strandat 1134.270 kb on + strandat 1134.520 kb on - strandat 1134.525 kb on - strandat 1134.525 kb on - strandat 1134.527 kb on + strandat 1134.543 kb on + strandat 1134.754 kb on + strand, within HP15_1107at 1134.789 kb on + strand, within HP15_1107at 1134.797 kb on + strand, within HP15_1107at 1134.797 kb on + strand, within HP15_1107at 1134.805 kb on - strand, within HP15_1107at 1134.805 kb on - strand, within HP15_1107at 1134.871 kb on - strand, within HP15_1107at 1134.935 kb on + strand, within HP15_1107at 1134.945 kb on + strand, within HP15_1107at 1134.945 kb on + strand, within HP15_1107at 1134.953 kb on - strand, within HP15_1107

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol%
remove
1,131,765 + +1.4
1,131,774 - +1.2
1,131,786 - +0.8
1,131,801 - -0.8
1,131,814 + +0.1
1,131,820 - -0.4
1,131,873 + +0.4
1,131,952 - -1.1
1,131,987 + -2.0
1,132,044 - +0.7
1,132,080 + +0.8
1,132,082 + +0.2
1,132,088 - -0.1
1,132,090 - +0.3
1,132,220 + HP15_1105 0.44 -0.3
1,132,230 + HP15_1105 0.52 -1.8
1,132,283 + +0.5
1,132,293 + -0.9
1,132,310 + +0.5
1,132,321 - +0.1
1,132,370 - -0.4
1,132,955 + HP15_1106 0.17 -1.0
1,133,092 - HP15_1106 0.28 -1.7
1,133,094 + HP15_1106 0.28 -0.8
1,133,363 - HP15_1106 0.49 -0.2
1,133,446 + HP15_1106 0.56 -2.4
1,133,731 - HP15_1106 0.79 -0.8
1,133,782 + HP15_1106 0.83 -1.2
1,133,827 + HP15_1106 0.87 +0.4
1,133,830 - HP15_1106 0.87 -0.1
1,133,907 - +2.2
1,134,127 - +0.3
1,134,201 + +0.8
1,134,270 + -0.2
1,134,520 - +0.4
1,134,525 - +0.5
1,134,525 - -0.6
1,134,527 + -1.0
1,134,543 + +1.1
1,134,754 + HP15_1107 0.16 +0.1
1,134,789 + HP15_1107 0.20 -0.3
1,134,797 + HP15_1107 0.21 -0.5
1,134,797 + HP15_1107 0.21 +0.8
1,134,805 - HP15_1107 0.21 +0.5
1,134,805 - HP15_1107 0.21 +1.2
1,134,871 - HP15_1107 0.28 +1.0
1,134,935 + HP15_1107 0.34 -0.2
1,134,945 + HP15_1107 0.35 +0.2
1,134,945 + HP15_1107 0.35 -0.1
1,134,953 - HP15_1107 0.36 -0.4

Or see this region's nucleotide sequence