Experiment: m.b. methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_994 and HP15_995 overlap by 1 nucleotides HP15_995 and HP15_996 are separated by 86 nucleotides HP15_996 and HP15_997 are separated by 18 nucleotides
HP15_994: HP15_994 - glycine betaine/carnitine/choline ABC transporter ATP-binding protein, at 1,002,273 to 1,003,220
_994
HP15_995: HP15_995 - binding-protein-dependent transport systems inner membrane component, at 1,003,220 to 1,003,963
_995
HP15_996: HP15_996 - sugar efflux permease, MFS-like protein, at 1,004,050 to 1,005,321
_996
HP15_997: HP15_997 - conserved hypothetical protein, at 1,005,340 to 1,007,325
_997
Position (kb)
1004
1005
1006 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1003.129 kb on + strand at 1003.162 kb on - strand at 1003.162 kb on - strand at 1003.233 kb on - strand at 1003.253 kb on + strand at 1003.310 kb on + strand, within HP15_995 at 1003.388 kb on - strand, within HP15_995 at 1003.410 kb on - strand, within HP15_995 at 1003.410 kb on - strand, within HP15_995 at 1003.504 kb on - strand, within HP15_995 at 1003.541 kb on + strand, within HP15_995 at 1003.573 kb on + strand, within HP15_995 at 1003.614 kb on - strand, within HP15_995 at 1003.621 kb on - strand at 1003.663 kb on + strand, within HP15_995 at 1003.663 kb on + strand, within HP15_995 at 1003.663 kb on + strand, within HP15_995 at 1003.722 kb on + strand, within HP15_995 at 1003.722 kb on + strand, within HP15_995 at 1003.727 kb on + strand, within HP15_995 at 1003.730 kb on - strand, within HP15_995 at 1003.747 kb on - strand, within HP15_995 at 1003.797 kb on + strand, within HP15_995 at 1003.847 kb on + strand, within HP15_995 at 1004.095 kb on - strand at 1004.095 kb on - strand at 1004.161 kb on + strand at 1004.365 kb on - strand, within HP15_996 at 1004.383 kb on + strand, within HP15_996 at 1004.383 kb on + strand, within HP15_996 at 1004.391 kb on - strand, within HP15_996 at 1004.522 kb on + strand, within HP15_996 at 1004.530 kb on + strand, within HP15_996 at 1004.622 kb on - strand, within HP15_996 at 1004.678 kb on - strand, within HP15_996 at 1004.850 kb on - strand, within HP15_996 at 1004.945 kb on + strand, within HP15_996 at 1004.967 kb on + strand, within HP15_996 at 1004.968 kb on + strand, within HP15_996 at 1004.987 kb on + strand, within HP15_996 at 1005.026 kb on - strand, within HP15_996 at 1005.038 kb on + strand, within HP15_996 at 1005.051 kb on - strand, within HP15_996 at 1005.077 kb on - strand, within HP15_996 at 1005.149 kb on - strand, within HP15_996 at 1005.149 kb on - strand, within HP15_996 at 1005.163 kb on - strand, within HP15_996 at 1005.238 kb on - strand at 1005.328 kb on - strand at 1005.345 kb on - strand at 1005.353 kb on - strand at 1005.457 kb on - strand at 1005.556 kb on + strand, within HP15_997 at 1005.756 kb on + strand, within HP15_997 at 1005.848 kb on - strand, within HP15_997 at 1005.965 kb on + strand, within HP15_997 at 1005.973 kb on - strand, within HP15_997 at 1005.973 kb on - strand, within HP15_997 at 1006.011 kb on + strand, within HP15_997 at 1006.021 kb on + strand, within HP15_997 at 1006.029 kb on - strand, within HP15_997 at 1006.046 kb on + strand, within HP15_997 at 1006.051 kb on + strand, within HP15_997 at 1006.137 kb on + strand, within HP15_997 at 1006.137 kb on + strand, within HP15_997 at 1006.140 kb on - strand, within HP15_997 at 1006.210 kb on + strand, within HP15_997
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. methylglyoxal 0.008 vol% remove 1,003,129 + -0.5 1,003,162 - +0.1 1,003,162 - +0.8 1,003,233 - +0.0 1,003,253 + +0.8 1,003,310 + HP15_995 0.12 -0.6 1,003,388 - HP15_995 0.23 -0.4 1,003,410 - HP15_995 0.26 +0.7 1,003,410 - HP15_995 0.26 +0.7 1,003,504 - HP15_995 0.38 +1.2 1,003,541 + HP15_995 0.43 -0.1 1,003,573 + HP15_995 0.47 +0.7 1,003,614 - HP15_995 0.53 -0.6 1,003,621 - +1.2 1,003,663 + HP15_995 0.60 +1.1 1,003,663 + HP15_995 0.60 +1.0 1,003,663 + HP15_995 0.60 +0.1 1,003,722 + HP15_995 0.67 +0.1 1,003,722 + HP15_995 0.67 +1.4 1,003,727 + HP15_995 0.68 -0.1 1,003,730 - HP15_995 0.69 +2.8 1,003,747 - HP15_995 0.71 -0.4 1,003,797 + HP15_995 0.78 -0.2 1,003,847 + HP15_995 0.84 +2.4 1,004,095 - +1.0 1,004,095 - +2.8 1,004,161 + +0.2 1,004,365 - HP15_996 0.25 -0.8 1,004,383 + HP15_996 0.26 +0.6 1,004,383 + HP15_996 0.26 -0.2 1,004,391 - HP15_996 0.27 +2.4 1,004,522 + HP15_996 0.37 -0.4 1,004,530 + HP15_996 0.38 -1.3 1,004,622 - HP15_996 0.45 -0.2 1,004,678 - HP15_996 0.49 -0.8 1,004,850 - HP15_996 0.63 -1.1 1,004,945 + HP15_996 0.70 -0.3 1,004,967 + HP15_996 0.72 +0.3 1,004,968 + HP15_996 0.72 -0.8 1,004,987 + HP15_996 0.74 +1.7 1,005,026 - HP15_996 0.77 -1.8 1,005,038 + HP15_996 0.78 +3.5 1,005,051 - HP15_996 0.79 -0.8 1,005,077 - HP15_996 0.81 +0.2 1,005,149 - HP15_996 0.86 +2.2 1,005,149 - HP15_996 0.86 +0.6 1,005,163 - HP15_996 0.88 +0.1 1,005,238 - -0.7 1,005,328 - +1.4 1,005,345 - +2.2 1,005,353 - -0.6 1,005,457 - -0.4 1,005,556 + HP15_997 0.11 +2.2 1,005,756 + HP15_997 0.21 +0.5 1,005,848 - HP15_997 0.26 -1.5 1,005,965 + HP15_997 0.31 -0.2 1,005,973 - HP15_997 0.32 -0.0 1,005,973 - HP15_997 0.32 +0.2 1,006,011 + HP15_997 0.34 -0.2 1,006,021 + HP15_997 0.34 +2.8 1,006,029 - HP15_997 0.35 -0.8 1,006,046 + HP15_997 0.36 -1.0 1,006,051 + HP15_997 0.36 +0.1 1,006,137 + HP15_997 0.40 +1.5 1,006,137 + HP15_997 0.40 -2.2 1,006,140 - HP15_997 0.40 -1.1 1,006,210 + HP15_997 0.44 -1.1
Or see this region's nucleotide sequence