Experiment: L-Leucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0162 and Sama_0163 are separated by 317 nucleotides Sama_0163 and Sama_0164 are separated by 68 nucleotides Sama_0164 and Sama_0165 are separated by 79 nucleotides
Sama_0162: Sama_0162 - biopolymer transport protein ExbD/TolR (RefSeq), at 192,484 to 192,888
_0162
Sama_0163: Sama_0163 - hypothetical protein (RefSeq), at 193,206 to 193,613
_0163
Sama_0164: Sama_0164 - no description, at 193,682 to 193,900
_0164
Sama_0165: Sama_0165 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) <small>(from data)</small>, at 193,980 to 195,521
_0165
Position (kb) 193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.690 kb on + strand, within Sama_0162 at 192.756 kb on - strand, within Sama_0162 at 192.822 kb on + strand, within Sama_0162 at 192.822 kb on + strand, within Sama_0162 at 192.840 kb on + strand, within Sama_0162 at 192.872 kb on + strand at 192.873 kb on - strand at 192.888 kb on + strand at 192.888 kb on + strand at 192.889 kb on - strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.938 kb on + strand at 192.939 kb on - strand at 192.939 kb on - strand at 192.939 kb on - strand at 192.939 kb on - strand at 192.971 kb on + strand at 192.971 kb on + strand at 192.972 kb on - strand at 192.972 kb on - strand at 192.972 kb on - strand at 192.977 kb on - strand at 192.993 kb on + strand at 193.021 kb on + strand at 193.039 kb on - strand at 193.150 kb on + strand at 193.155 kb on + strand at 193.155 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.172 kb on + strand at 193.173 kb on - strand at 193.183 kb on + strand at 193.183 kb on + strand at 193.184 kb on - strand at 193.184 kb on - strand at 193.200 kb on + strand at 193.200 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.207 kb on + strand at 193.208 kb on - strand at 193.280 kb on + strand, within Sama_0163 at 193.280 kb on + strand, within Sama_0163 at 193.281 kb on - strand, within Sama_0163 at 193.284 kb on - strand, within Sama_0163 at 193.433 kb on - strand, within Sama_0163 at 193.445 kb on + strand, within Sama_0163 at 193.445 kb on + strand, within Sama_0163 at 193.445 kb on + strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.446 kb on - strand, within Sama_0163 at 193.485 kb on - strand, within Sama_0163 at 193.501 kb on + strand, within Sama_0163 at 193.501 kb on + strand, within Sama_0163 at 193.502 kb on - strand, within Sama_0163 at 193.547 kb on + strand, within Sama_0163 at 193.547 kb on + strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.548 kb on - strand, within Sama_0163 at 193.576 kb on + strand at 193.576 kb on + strand at 193.576 kb on + strand at 193.576 kb on + strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.577 kb on - strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.609 kb on + strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.610 kb on - strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.613 kb on + strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.614 kb on - strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.633 kb on + strand at 193.634 kb on - strand at 193.634 kb on - strand at 193.634 kb on - strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.637 kb on + strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.638 kb on - strand at 193.657 kb on + strand at 193.657 kb on + strand at 193.657 kb on + strand at 193.658 kb on - strand at 193.658 kb on - strand at 193.658 kb on - strand at 193.658 kb on - strand at 193.662 kb on + strand at 193.662 kb on + strand at 193.663 kb on - strand at 193.670 kb on + strand at 193.671 kb on - strand at 193.671 kb on - strand at 193.671 kb on - strand at 193.671 kb on - strand at 193.684 kb on - strand at 193.692 kb on + strand at 193.693 kb on - strand at 193.743 kb on + strand, within Sama_0164 at 193.743 kb on + strand, within Sama_0164 at 193.743 kb on + strand, within Sama_0164 at 193.744 kb on - strand, within Sama_0164 at 193.744 kb on - strand, within Sama_0164 at 193.791 kb on + strand, within Sama_0164 at 193.791 kb on + strand, within Sama_0164 at 193.853 kb on + strand, within Sama_0164 at 193.853 kb on + strand, within Sama_0164 at 193.861 kb on + strand, within Sama_0164 at 193.862 kb on - strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.868 kb on + strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.869 kb on - strand, within Sama_0164 at 193.887 kb on + strand at 193.887 kb on + strand at 193.887 kb on + strand at 193.897 kb on + strand at 193.897 kb on + strand at 193.897 kb on + strand at 193.898 kb on - strand at 193.898 kb on - strand at 193.956 kb on - strand at 193.965 kb on + strand at 193.966 kb on - strand at 193.966 kb on - strand at 193.978 kb on + strand at 193.978 kb on + strand at 193.979 kb on - strand at 194.016 kb on + strand at 194.017 kb on - strand at 194.023 kb on + strand at 194.023 kb on + strand at 194.024 kb on - strand at 194.024 kb on - strand at 194.024 kb on - strand at 194.068 kb on + strand at 194.068 kb on + strand at 194.069 kb on - strand at 194.077 kb on + strand at 194.078 kb on - strand at 194.078 kb on - strand at 194.078 kb on - strand at 194.078 kb on - strand at 194.104 kb on - strand at 194.264 kb on - strand, within Sama_0165 at 194.296 kb on + strand, within Sama_0165 at 194.296 kb on + strand, within Sama_0165 at 194.297 kb on - strand, within Sama_0165 at 194.297 kb on - strand, within Sama_0165 at 194.387 kb on + strand, within Sama_0165 at 194.387 kb on + strand, within Sama_0165 at 194.387 kb on + strand, within Sama_0165 at 194.388 kb on - strand, within Sama_0165 at 194.388 kb on - strand, within Sama_0165 at 194.429 kb on + strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.430 kb on - strand, within Sama_0165 at 194.436 kb on + strand, within Sama_0165 at 194.436 kb on + strand, within Sama_0165 at 194.436 kb on + strand, within Sama_0165 at 194.437 kb on - strand, within Sama_0165 at 194.437 kb on - strand, within Sama_0165 at 194.449 kb on + strand, within Sama_0165 at 194.449 kb on + strand, within Sama_0165 at 194.450 kb on - strand, within Sama_0165 at 194.467 kb on + strand, within Sama_0165 at 194.468 kb on - strand, within Sama_0165 at 194.517 kb on + strand, within Sama_0165 at 194.517 kb on + strand, within Sama_0165 at 194.518 kb on - strand, within Sama_0165 at 194.599 kb on + strand, within Sama_0165 at 194.647 kb on - strand, within Sama_0165 at 194.647 kb on - strand, within Sama_0165 at 194.664 kb on + strand, within Sama_0165 at 194.664 kb on + strand, within Sama_0165 at 194.665 kb on - strand, within Sama_0165 at 194.665 kb on - strand, within Sama_0165 at 194.665 kb on - strand, within Sama_0165 at 194.738 kb on + strand, within Sama_0165 at 194.738 kb on + strand, within Sama_0165 at 194.749 kb on + strand, within Sama_0165 at 194.750 kb on - strand, within Sama_0165 at 194.750 kb on - strand, within Sama_0165 at 194.846 kb on + strand, within Sama_0165 at 194.846 kb on + strand, within Sama_0165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Leucine (N) remove 192,690 + Sama_0162 0.51 +1.4 192,756 - Sama_0162 0.67 -1.1 192,822 + Sama_0162 0.83 +0.4 192,822 + Sama_0162 0.83 -0.3 192,840 + Sama_0162 0.88 +0.3 192,872 + +0.8 192,873 - -1.7 192,888 + +0.3 192,888 + -0.9 192,889 - -0.7 192,938 + -0.4 192,938 + +2.0 192,938 + +0.2 192,938 + +0.3 192,938 + -1.0 192,938 + -0.2 192,938 + -0.1 192,938 + +1.1 192,938 + +0.1 192,938 + +1.0 192,938 + -1.8 192,938 + -1.3 192,939 - -0.4 192,939 - -0.6 192,939 - +1.4 192,939 - +0.2 192,971 + -0.3 192,971 + -1.7 192,972 - +0.6 192,972 - -0.5 192,972 - -0.3 192,977 - -2.8 192,993 + +1.0 193,021 + -2.7 193,039 - +1.4 193,150 + +1.3 193,155 + -0.5 193,155 + -0.3 193,172 + +0.7 193,172 + -0.3 193,172 + +2.1 193,172 + +0.0 193,172 + -0.4 193,172 + +0.1 193,172 + -0.2 193,173 - -0.6 193,183 + -0.2 193,183 + +0.6 193,184 - -0.0 193,184 - -1.4 193,200 + -1.5 193,200 + -0.3 193,207 + -1.1 193,207 + +0.0 193,207 + -1.2 193,207 + -0.3 193,207 + +0.8 193,208 - -0.8 193,280 + Sama_0163 0.18 -0.6 193,280 + Sama_0163 0.18 +0.1 193,281 - Sama_0163 0.18 +0.9 193,284 - Sama_0163 0.19 -1.0 193,433 - Sama_0163 0.56 +1.6 193,445 + Sama_0163 0.59 +0.5 193,445 + Sama_0163 0.59 -0.9 193,445 + Sama_0163 0.59 -0.4 193,446 - Sama_0163 0.59 +0.1 193,446 - Sama_0163 0.59 +1.1 193,446 - Sama_0163 0.59 +2.1 193,446 - Sama_0163 0.59 -2.0 193,446 - Sama_0163 0.59 -0.8 193,485 - Sama_0163 0.68 +0.4 193,501 + Sama_0163 0.72 -1.3 193,501 + Sama_0163 0.72 +0.5 193,502 - Sama_0163 0.73 +1.2 193,547 + Sama_0163 0.84 -0.9 193,547 + Sama_0163 0.84 +1.0 193,548 - Sama_0163 0.84 +0.1 193,548 - Sama_0163 0.84 +0.7 193,548 - Sama_0163 0.84 -1.1 193,548 - Sama_0163 0.84 -0.0 193,548 - Sama_0163 0.84 +0.2 193,576 + +0.1 193,576 + -0.8 193,576 + -0.0 193,576 + -1.1 193,577 - -1.2 193,577 - -1.7 193,577 - +0.9 193,577 - -0.5 193,577 - +0.7 193,577 - +1.6 193,609 + +0.5 193,609 + -1.2 193,609 + -0.1 193,609 + +0.8 193,609 + -1.6 193,609 + +0.2 193,609 + -1.0 193,609 + +0.6 193,609 + +0.6 193,609 + -1.5 193,609 + +0.6 193,609 + -1.2 193,609 + -0.0 193,609 + +1.4 193,610 - -0.8 193,610 - -1.4 193,610 - -1.7 193,610 - +0.9 193,610 - -0.8 193,610 - +0.7 193,610 - +0.2 193,610 - +1.4 193,610 - -0.4 193,613 + -2.7 193,613 + +0.5 193,613 + -0.0 193,613 + +0.2 193,613 + +1.4 193,613 + -0.6 193,613 + +0.3 193,613 + -1.2 193,613 + -0.5 193,613 + +0.0 193,613 + +1.5 193,613 + +0.3 193,613 + +0.3 193,613 + -0.5 193,613 + +0.3 193,614 - -0.3 193,614 - +0.9 193,614 - -1.9 193,614 - -0.6 193,614 - -1.1 193,614 - -0.5 193,614 - -1.1 193,614 - +0.4 193,614 - +0.5 193,614 - -0.1 193,614 - -1.4 193,614 - +0.1 193,614 - -1.3 193,614 - -1.2 193,614 - -1.0 193,614 - +0.3 193,614 - +0.1 193,614 - -1.2 193,614 - +0.8 193,614 - +0.3 193,614 - -0.4 193,633 + -1.0 193,633 + +0.3 193,633 + +1.4 193,633 + +0.4 193,633 + +0.8 193,634 - -1.9 193,634 - +0.5 193,634 - +0.5 193,637 + -0.8 193,637 + +0.7 193,637 + -0.6 193,637 + -0.2 193,637 + -0.1 193,637 + +1.1 193,637 + +0.4 193,637 + +0.7 193,638 - -0.8 193,638 - +0.4 193,638 - -0.9 193,638 - +1.0 193,638 - -1.2 193,638 - +0.3 193,638 - +0.3 193,638 - -0.0 193,638 - +1.4 193,638 - -1.0 193,657 + +0.1 193,657 + -1.0 193,657 + -0.5 193,658 - +1.7 193,658 - -0.2 193,658 - +0.5 193,658 - -0.0 193,662 + -1.1 193,662 + -0.3 193,663 - -1.1 193,670 + -0.7 193,671 - -0.6 193,671 - +1.5 193,671 - -1.0 193,671 - +1.1 193,684 - -0.1 193,692 + +1.3 193,693 - -0.4 193,743 + Sama_0164 0.28 +2.0 193,743 + Sama_0164 0.28 -0.3 193,743 + Sama_0164 0.28 -0.6 193,744 - Sama_0164 0.28 -1.3 193,744 - Sama_0164 0.28 -0.7 193,791 + Sama_0164 0.50 +0.5 193,791 + Sama_0164 0.50 +0.2 193,853 + Sama_0164 0.78 +0.2 193,853 + Sama_0164 0.78 -0.9 193,861 + Sama_0164 0.82 +0.4 193,862 - Sama_0164 0.82 -0.1 193,868 + Sama_0164 0.85 +0.2 193,868 + Sama_0164 0.85 -0.2 193,868 + Sama_0164 0.85 -0.2 193,868 + Sama_0164 0.85 -0.2 193,868 + Sama_0164 0.85 -2.1 193,868 + Sama_0164 0.85 +2.1 193,869 - Sama_0164 0.85 +1.0 193,869 - Sama_0164 0.85 +2.5 193,869 - Sama_0164 0.85 -1.7 193,869 - Sama_0164 0.85 +0.2 193,869 - Sama_0164 0.85 +2.5 193,887 + -1.4 193,887 + +1.3 193,887 + -0.5 193,897 + -0.6 193,897 + -1.2 193,897 + -0.4 193,898 - -1.5 193,898 - -0.4 193,956 - -1.0 193,965 + -0.6 193,966 - -1.1 193,966 - +0.3 193,978 + +0.1 193,978 + +0.7 193,979 - +1.5 194,016 + +0.7 194,017 - -0.5 194,023 + +0.2 194,023 + -0.2 194,024 - +0.6 194,024 - +0.2 194,024 - +0.6 194,068 + +0.2 194,068 + -0.1 194,069 - -0.4 194,077 + +0.6 194,078 - -0.6 194,078 - -0.4 194,078 - -2.7 194,078 - -0.1 194,104 - -1.0 194,264 - Sama_0165 0.18 +0.6 194,296 + Sama_0165 0.20 +1.2 194,296 + Sama_0165 0.20 +0.7 194,297 - Sama_0165 0.21 +0.8 194,297 - Sama_0165 0.21 -1.0 194,387 + Sama_0165 0.26 -1.1 194,387 + Sama_0165 0.26 +0.5 194,387 + Sama_0165 0.26 -1.6 194,388 - Sama_0165 0.26 +0.8 194,388 - Sama_0165 0.26 -0.1 194,429 + Sama_0165 0.29 -0.5 194,430 - Sama_0165 0.29 +2.9 194,430 - Sama_0165 0.29 +1.1 194,430 - Sama_0165 0.29 +0.5 194,430 - Sama_0165 0.29 -0.8 194,436 + Sama_0165 0.30 -1.1 194,436 + Sama_0165 0.30 +0.2 194,436 + Sama_0165 0.30 +1.2 194,437 - Sama_0165 0.30 +0.2 194,437 - Sama_0165 0.30 +0.0 194,449 + Sama_0165 0.30 -2.1 194,449 + Sama_0165 0.30 +0.2 194,450 - Sama_0165 0.30 -0.0 194,467 + Sama_0165 0.32 -1.2 194,468 - Sama_0165 0.32 +0.1 194,517 + Sama_0165 0.35 +0.3 194,517 + Sama_0165 0.35 -0.2 194,518 - Sama_0165 0.35 +1.0 194,599 + Sama_0165 0.40 -0.7 194,647 - Sama_0165 0.43 +1.1 194,647 - Sama_0165 0.43 +0.4 194,664 + Sama_0165 0.44 +0.5 194,664 + Sama_0165 0.44 +0.6 194,665 - Sama_0165 0.44 +1.4 194,665 - Sama_0165 0.44 -0.2 194,665 - Sama_0165 0.44 -0.8 194,738 + Sama_0165 0.49 +0.3 194,738 + Sama_0165 0.49 -1.4 194,749 + Sama_0165 0.50 -0.4 194,750 - Sama_0165 0.50 +3.1 194,750 - Sama_0165 0.50 -0.2 194,846 + Sama_0165 0.56 -0.6 194,846 + Sama_0165 0.56 -0.2
Or see this region's nucleotide sequence