Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4106 and Dshi_4107 are separated by 132 nucleotides Dshi_4107 and Dshi_4108 are separated by 472 nucleotides
Dshi_4106: Dshi_4106 - hypothetical protein (RefSeq), at 35,263 to 36,330
_4106
Dshi_4107: Dshi_4107 - hypothetical protein (RefSeq), at 36,463 to 37,227
_4107
Dshi_4108: Dshi_4108 - hypothetical protein (RefSeq), at 37,700 to 37,960
_4108
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 35.528 kb on + strand, within Dshi_4106 at 35.530 kb on + strand, within Dshi_4106 at 35.559 kb on + strand, within Dshi_4106 at 35.611 kb on - strand, within Dshi_4106 at 35.763 kb on - strand, within Dshi_4106 at 35.765 kb on + strand, within Dshi_4106 at 35.838 kb on - strand, within Dshi_4106 at 36.059 kb on + strand, within Dshi_4106 at 36.083 kb on + strand, within Dshi_4106 at 36.085 kb on + strand, within Dshi_4106 at 36.100 kb on - strand, within Dshi_4106 at 36.100 kb on - strand, within Dshi_4106 at 36.151 kb on - strand, within Dshi_4106 at 36.184 kb on + strand, within Dshi_4106 at 36.216 kb on + strand, within Dshi_4106 at 36.238 kb on + strand at 36.257 kb on + strand at 36.258 kb on + strand at 36.266 kb on - strand at 36.271 kb on + strand at 36.271 kb on + strand at 36.271 kb on + strand at 36.271 kb on + strand at 36.272 kb on - strand at 36.279 kb on - strand at 36.279 kb on - strand at 36.291 kb on - strand at 36.293 kb on + strand at 36.293 kb on + strand at 36.300 kb on - strand at 36.353 kb on - strand at 36.358 kb on + strand at 36.358 kb on + strand at 36.366 kb on - strand at 36.366 kb on - strand at 36.440 kb on - strand at 36.468 kb on - strand at 36.470 kb on + strand at 36.485 kb on - strand at 36.485 kb on - strand at 36.500 kb on - strand at 36.528 kb on + strand at 36.599 kb on - strand, within Dshi_4107 at 36.636 kb on + strand, within Dshi_4107 at 36.644 kb on - strand, within Dshi_4107 at 36.652 kb on - strand, within Dshi_4107 at 36.654 kb on - strand, within Dshi_4107 at 36.658 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.663 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.665 kb on + strand, within Dshi_4107 at 36.666 kb on - strand, within Dshi_4107 at 36.671 kb on + strand, within Dshi_4107 at 36.671 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.673 kb on - strand, within Dshi_4107 at 36.681 kb on - strand, within Dshi_4107 at 36.689 kb on - strand, within Dshi_4107 at 36.699 kb on + strand, within Dshi_4107 at 36.713 kb on + strand, within Dshi_4107 at 36.725 kb on + strand, within Dshi_4107 at 36.733 kb on - strand, within Dshi_4107 at 36.797 kb on + strand, within Dshi_4107 at 36.797 kb on + strand, within Dshi_4107 at 36.810 kb on - strand, within Dshi_4107 at 36.826 kb on - strand, within Dshi_4107 at 36.831 kb on - strand, within Dshi_4107 at 36.836 kb on - strand, within Dshi_4107 at 36.843 kb on - strand, within Dshi_4107 at 36.844 kb on - strand, within Dshi_4107 at 36.849 kb on - strand, within Dshi_4107 at 36.884 kb on - strand, within Dshi_4107 at 36.903 kb on - strand, within Dshi_4107 at 36.903 kb on - strand, within Dshi_4107 at 36.903 kb on - strand, within Dshi_4107 at 36.924 kb on + strand, within Dshi_4107 at 36.932 kb on - strand, within Dshi_4107 at 36.932 kb on - strand, within Dshi_4107 at 36.932 kb on - strand, within Dshi_4107 at 36.945 kb on - strand, within Dshi_4107 at 36.947 kb on - strand, within Dshi_4107 at 36.962 kb on + strand, within Dshi_4107 at 36.972 kb on + strand, within Dshi_4107 at 36.989 kb on + strand, within Dshi_4107 at 37.004 kb on + strand, within Dshi_4107 at 37.018 kb on + strand, within Dshi_4107 at 37.026 kb on - strand, within Dshi_4107 at 37.037 kb on - strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.039 kb on + strand, within Dshi_4107 at 37.047 kb on - strand, within Dshi_4107 at 37.047 kb on - strand, within Dshi_4107 at 37.108 kb on + strand, within Dshi_4107 at 37.153 kb on + strand at 37.153 kb on + strand at 37.190 kb on - strand at 37.230 kb on + strand at 37.230 kb on + strand at 37.235 kb on + strand at 37.245 kb on + strand at 37.245 kb on + strand at 37.284 kb on + strand at 37.332 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.385 kb on + strand at 37.392 kb on + strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.393 kb on - strand at 37.404 kb on + strand at 37.404 kb on + strand at 37.405 kb on - strand at 37.410 kb on - strand at 37.421 kb on + strand at 37.496 kb on + strand at 37.512 kb on + strand at 37.542 kb on + strand at 37.560 kb on - strand at 37.567 kb on - strand at 37.600 kb on - strand at 37.681 kb on - strand at 37.718 kb on - strand at 37.761 kb on - strand, within Dshi_4108 at 37.785 kb on + strand, within Dshi_4108 at 37.908 kb on - strand, within Dshi_4108 at 37.913 kb on + strand, within Dshi_4108 at 37.913 kb on + strand, within Dshi_4108 at 37.916 kb on - strand, within Dshi_4108 at 37.921 kb on - strand, within Dshi_4108 at 37.939 kb on + strand at 37.948 kb on - strand at 37.954 kb on + strand at 37.954 kb on + strand at 37.954 kb on + strand at 37.954 kb on + strand at 37.960 kb on - strand at 37.962 kb on - strand at 37.962 kb on - strand at 37.966 kb on + strand at 37.966 kb on + strand at 37.974 kb on - strand at 37.974 kb on - strand at 37.996 kb on - strand at 38.001 kb on - strand at 38.001 kb on - strand at 38.002 kb on + strand at 38.010 kb on - strand at 38.011 kb on - strand at 38.024 kb on - strand at 38.029 kb on + strand at 38.029 kb on + strand at 38.029 kb on + strand at 38.032 kb on - strand at 38.034 kb on + strand at 38.034 kb on + strand at 38.037 kb on - strand at 38.041 kb on + strand at 38.042 kb on - strand at 38.064 kb on + strand at 38.066 kb on + strand at 38.066 kb on + strand at 38.066 kb on + strand at 38.066 kb on - strand at 38.072 kb on - strand at 38.074 kb on - strand at 38.074 kb on - strand at 38.082 kb on + strand at 38.101 kb on + strand at 38.111 kb on + strand at 38.111 kb on + strand at 38.111 kb on + strand at 38.111 kb on + strand at 38.119 kb on - strand at 38.119 kb on - strand at 38.119 kb on - strand at 38.119 kb on - strand at 38.120 kb on + strand at 38.131 kb on + strand at 38.136 kb on + strand at 38.180 kb on - strand at 38.198 kb on - strand at 38.205 kb on + strand at 38.205 kb on + strand at 38.217 kb on + strand at 38.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 35,528 + Dshi_4106 0.25 +0.1 35,530 + Dshi_4106 0.25 -0.4 35,559 + Dshi_4106 0.28 -0.7 35,611 - Dshi_4106 0.33 +0.2 35,763 - Dshi_4106 0.47 -1.2 35,765 + Dshi_4106 0.47 +0.6 35,838 - Dshi_4106 0.54 -0.1 36,059 + Dshi_4106 0.75 -2.8 36,083 + Dshi_4106 0.77 +0.0 36,085 + Dshi_4106 0.77 -0.3 36,100 - Dshi_4106 0.78 +0.0 36,100 - Dshi_4106 0.78 -2.0 36,151 - Dshi_4106 0.83 -1.3 36,184 + Dshi_4106 0.86 -0.4 36,216 + Dshi_4106 0.89 -1.1 36,238 + +0.6 36,257 + +0.2 36,258 + -0.9 36,266 - -0.7 36,271 + +0.0 36,271 + -0.3 36,271 + -0.9 36,271 + -0.7 36,272 - +0.5 36,279 - +0.3 36,279 - +0.9 36,291 - +0.5 36,293 + -0.4 36,293 + -0.6 36,300 - -1.1 36,353 - -0.5 36,358 + +0.2 36,358 + +0.6 36,366 - +0.0 36,366 - -0.7 36,440 - -0.3 36,468 - -1.6 36,470 + +0.5 36,485 - -1.8 36,485 - -0.2 36,500 - -0.6 36,528 + -2.1 36,599 - Dshi_4107 0.18 -2.8 36,636 + Dshi_4107 0.23 -0.1 36,644 - Dshi_4107 0.24 +0.1 36,652 - Dshi_4107 0.25 +1.5 36,654 - Dshi_4107 0.25 -0.4 36,658 + Dshi_4107 0.25 -0.6 36,663 + Dshi_4107 0.26 +0.5 36,663 + Dshi_4107 0.26 -0.5 36,663 + Dshi_4107 0.26 -2.3 36,663 + Dshi_4107 0.26 -0.6 36,663 + Dshi_4107 0.26 -0.4 36,665 + Dshi_4107 0.26 -2.2 36,665 + Dshi_4107 0.26 +0.0 36,665 + Dshi_4107 0.26 -0.5 36,665 + Dshi_4107 0.26 +0.7 36,666 - Dshi_4107 0.27 +0.7 36,671 + Dshi_4107 0.27 -0.3 36,671 - Dshi_4107 0.27 -0.8 36,673 - Dshi_4107 0.27 -0.6 36,673 - Dshi_4107 0.27 -0.1 36,673 - Dshi_4107 0.27 +0.8 36,673 - Dshi_4107 0.27 +1.2 36,673 - Dshi_4107 0.27 -2.0 36,673 - Dshi_4107 0.27 -0.5 36,681 - Dshi_4107 0.28 +0.3 36,689 - Dshi_4107 0.30 -0.4 36,699 + Dshi_4107 0.31 -1.2 36,713 + Dshi_4107 0.33 -0.8 36,725 + Dshi_4107 0.34 +0.4 36,733 - Dshi_4107 0.35 -0.3 36,797 + Dshi_4107 0.44 -0.6 36,797 + Dshi_4107 0.44 -0.8 36,810 - Dshi_4107 0.45 -0.4 36,826 - Dshi_4107 0.47 -0.1 36,831 - Dshi_4107 0.48 -0.3 36,836 - Dshi_4107 0.49 +0.3 36,843 - Dshi_4107 0.50 -0.2 36,844 - Dshi_4107 0.50 -0.3 36,849 - Dshi_4107 0.50 +0.3 36,884 - Dshi_4107 0.55 -1.1 36,903 - Dshi_4107 0.58 -0.0 36,903 - Dshi_4107 0.58 -0.9 36,903 - Dshi_4107 0.58 -0.6 36,924 + Dshi_4107 0.60 +0.1 36,932 - Dshi_4107 0.61 -1.1 36,932 - Dshi_4107 0.61 -0.1 36,932 - Dshi_4107 0.61 +0.2 36,945 - Dshi_4107 0.63 -0.1 36,947 - Dshi_4107 0.63 +0.4 36,962 + Dshi_4107 0.65 +0.4 36,972 + Dshi_4107 0.67 +1.3 36,989 + Dshi_4107 0.69 +1.3 37,004 + Dshi_4107 0.71 -0.5 37,018 + Dshi_4107 0.73 +0.3 37,026 - Dshi_4107 0.74 -2.7 37,037 - Dshi_4107 0.75 -0.4 37,039 + Dshi_4107 0.75 -0.8 37,039 + Dshi_4107 0.75 -1.3 37,039 + Dshi_4107 0.75 -0.1 37,039 + Dshi_4107 0.75 +0.7 37,039 + Dshi_4107 0.75 +0.4 37,047 - Dshi_4107 0.76 +0.4 37,047 - Dshi_4107 0.76 +1.2 37,108 + Dshi_4107 0.84 -0.1 37,153 + +0.4 37,153 + +0.1 37,190 - -0.1 37,230 + +0.9 37,230 + +0.2 37,235 + -0.1 37,245 + -0.4 37,245 + -0.3 37,284 + -0.3 37,332 + -1.4 37,385 + -2.7 37,385 + -0.6 37,385 + -0.0 37,385 + +0.3 37,385 + -0.6 37,392 + -0.8 37,393 - +0.2 37,393 - -0.0 37,393 - -0.2 37,393 - +0.7 37,393 - +0.4 37,393 - +0.2 37,404 + -0.9 37,404 + -1.2 37,405 - -0.9 37,410 - +0.1 37,421 + -1.1 37,496 + -0.7 37,512 + +0.5 37,542 + -0.2 37,560 - +0.3 37,567 - -0.3 37,600 - +1.2 37,681 - -2.1 37,718 - +0.1 37,761 - Dshi_4108 0.23 -0.5 37,785 + Dshi_4108 0.33 +0.4 37,908 - Dshi_4108 0.80 -2.6 37,913 + Dshi_4108 0.82 -0.8 37,913 + Dshi_4108 0.82 +0.7 37,916 - Dshi_4108 0.83 -0.8 37,921 - Dshi_4108 0.85 +0.7 37,939 + -1.3 37,948 - -0.6 37,954 + -0.2 37,954 + -0.3 37,954 + +0.9 37,954 + +1.1 37,960 - +0.0 37,962 - +1.2 37,962 - +1.2 37,966 + -1.2 37,966 + -0.5 37,974 - +0.3 37,974 - -0.8 37,996 - +0.8 38,001 - -0.4 38,001 - +0.4 38,002 + -0.6 38,010 - -0.2 38,011 - +1.4 38,024 - -0.5 38,029 + +0.1 38,029 + +0.3 38,029 + -0.4 38,032 - -0.8 38,034 + -1.8 38,034 + +0.3 38,037 - -0.7 38,041 + +0.4 38,042 - -1.2 38,064 + -1.7 38,066 + -1.4 38,066 + -1.3 38,066 + -0.3 38,066 - +0.3 38,072 - +0.2 38,074 - -0.2 38,074 - -0.8 38,082 + -0.7 38,101 + -0.8 38,111 + +1.3 38,111 + -0.5 38,111 + -1.1 38,111 + -0.2 38,119 - -1.7 38,119 - +0.2 38,119 - -0.3 38,119 - -2.3 38,120 + -0.4 38,131 + -0.6 38,136 + +0.4 38,180 - +0.2 38,198 - -0.1 38,205 + -0.0 38,205 + +0.2 38,217 + -0.4 38,223 + -1.8
Or see this region's nucleotide sequence