Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3839

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3838 and Dshi_3839 are separated by 135 nucleotidesDshi_3839 and Dshi_3840 are separated by 60 nucleotides Dshi_3838: Dshi_3838 - hypothetical protein (RefSeq), at 46,686 to 48,080 _3838 Dshi_3839: Dshi_3839 - Ferritin Dps family protein (RefSeq), at 48,216 to 48,713 _3839 Dshi_3840: Dshi_3840 - thiamine pyrophosphate protein TPP binding domain protein (RefSeq), at 48,774 to 50,414 _3840 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.222 kb on - strand, within Dshi_3838at 47.289 kb on + strand, within Dshi_3838at 47.315 kb on - strand, within Dshi_3838at 47.354 kb on + strand, within Dshi_3838at 47.362 kb on + strand, within Dshi_3838at 47.362 kb on + strand, within Dshi_3838at 47.367 kb on + strand, within Dshi_3838at 47.386 kb on + strand, within Dshi_3838at 47.386 kb on + strand, within Dshi_3838at 47.394 kb on - strand, within Dshi_3838at 47.447 kb on - strand, within Dshi_3838at 47.463 kb on - strand, within Dshi_3838at 47.488 kb on + strand, within Dshi_3838at 47.488 kb on + strand, within Dshi_3838at 47.496 kb on - strand, within Dshi_3838at 47.496 kb on - strand, within Dshi_3838at 47.525 kb on - strand, within Dshi_3838at 47.525 kb on - strand, within Dshi_3838at 47.582 kb on + strand, within Dshi_3838at 47.608 kb on - strand, within Dshi_3838at 47.662 kb on + strand, within Dshi_3838at 47.793 kb on + strand, within Dshi_3838at 47.800 kb on + strand, within Dshi_3838at 47.800 kb on - strand, within Dshi_3838at 47.859 kb on + strand, within Dshi_3838at 47.899 kb on + strand, within Dshi_3838at 47.912 kb on - strand, within Dshi_3838at 47.931 kb on - strand, within Dshi_3838at 47.931 kb on - strand, within Dshi_3838at 47.941 kb on + strandat 48.096 kb on + strandat 48.205 kb on + strandat 48.327 kb on - strand, within Dshi_3839at 48.327 kb on - strand, within Dshi_3839at 48.329 kb on - strand, within Dshi_3839at 48.552 kb on + strand, within Dshi_3839at 48.589 kb on + strand, within Dshi_3839at 48.610 kb on - strand, within Dshi_3839at 48.672 kb on - strandat 48.771 kb on + strandat 48.771 kb on + strandat 48.855 kb on + strandat 49.007 kb on + strand, within Dshi_3840at 49.015 kb on - strand, within Dshi_3840at 49.161 kb on + strand, within Dshi_3840at 49.172 kb on + strand, within Dshi_3840at 49.174 kb on - strand, within Dshi_3840at 49.191 kb on + strand, within Dshi_3840at 49.327 kb on - strand, within Dshi_3840at 49.385 kb on + strand, within Dshi_3840at 49.581 kb on - strand, within Dshi_3840at 49.663 kb on - strand, within Dshi_3840at 49.694 kb on + strand, within Dshi_3840

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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47,222 - Dshi_3838 0.38 +0.5
47,289 + Dshi_3838 0.43 -0.4
47,315 - Dshi_3838 0.45 -0.0
47,354 + Dshi_3838 0.48 +1.0
47,362 + Dshi_3838 0.48 +1.6
47,362 + Dshi_3838 0.48 -0.2
47,367 + Dshi_3838 0.49 +0.8
47,386 + Dshi_3838 0.50 +0.4
47,386 + Dshi_3838 0.50 +0.1
47,394 - Dshi_3838 0.51 +0.3
47,447 - Dshi_3838 0.55 -1.5
47,463 - Dshi_3838 0.56 -0.5
47,488 + Dshi_3838 0.57 +0.1
47,488 + Dshi_3838 0.57 +0.8
47,496 - Dshi_3838 0.58 +0.6
47,496 - Dshi_3838 0.58 -0.1
47,525 - Dshi_3838 0.60 -0.7
47,525 - Dshi_3838 0.60 -0.8
47,582 + Dshi_3838 0.64 +0.2
47,608 - Dshi_3838 0.66 +0.3
47,662 + Dshi_3838 0.70 -0.2
47,793 + Dshi_3838 0.79 -0.7
47,800 + Dshi_3838 0.80 +1.1
47,800 - Dshi_3838 0.80 +0.8
47,859 + Dshi_3838 0.84 -0.0
47,899 + Dshi_3838 0.87 -0.3
47,912 - Dshi_3838 0.88 -0.2
47,931 - Dshi_3838 0.89 +0.3
47,931 - Dshi_3838 0.89 -0.3
47,941 + +0.7
48,096 + +0.0
48,205 + -0.7
48,327 - Dshi_3839 0.22 -1.4
48,327 - Dshi_3839 0.22 +0.3
48,329 - Dshi_3839 0.23 +0.5
48,552 + Dshi_3839 0.67 -0.8
48,589 + Dshi_3839 0.75 -1.0
48,610 - Dshi_3839 0.79 -0.2
48,672 - -1.9
48,771 + -0.0
48,771 + -1.5
48,855 + -0.4
49,007 + Dshi_3840 0.14 +1.8
49,015 - Dshi_3840 0.15 -0.6
49,161 + Dshi_3840 0.24 +1.1
49,172 + Dshi_3840 0.24 -1.5
49,174 - Dshi_3840 0.24 +0.8
49,191 + Dshi_3840 0.25 +0.3
49,327 - Dshi_3840 0.34 -0.1
49,385 + Dshi_3840 0.37 -0.3
49,581 - Dshi_3840 0.49 -2.2
49,663 - Dshi_3840 0.54 -0.2
49,694 + Dshi_3840 0.56 -0.3

Or see this region's nucleotide sequence