Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2251

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2249 and Dshi_2250 overlap by 4 nucleotidesDshi_2250 and Dshi_2251 are separated by 2 nucleotidesDshi_2251 and Dshi_2252 are separated by 138 nucleotidesDshi_2252 and Dshi_2253 are separated by 186 nucleotides Dshi_2249: Dshi_2249 - NusB antitermination factor (RefSeq), at 2,370,535 to 2,371,014 _2249 Dshi_2250: Dshi_2250 - 6,7-dimethyl-8-ribityllumazine synthase (RefSeq), at 2,371,011 to 2,371,562 _2250 Dshi_2251: Dshi_2251 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 2,371,565 to 2,372,680 _2251 Dshi_2252: Dshi_2252 - riboflavin synthase, alpha subunit (RefSeq), at 2,372,819 to 2,373,421 _2252 Dshi_2253: Dshi_2253 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,373,608 to 2,374,894 _2253 Position (kb) 2371 2372 2373Strain fitness (log2 ratio) -2 -1 0 1at 2372.769 kb on - strandat 2373.422 kb on + strandat 2373.429 kb on - strandat 2373.429 kb on - strandat 2373.447 kb on - strandat 2373.474 kb on + strandat 2373.485 kb on + strandat 2373.493 kb on - strandat 2373.545 kb on - strandat 2373.604 kb on + strandat 2373.606 kb on - strandat 2373.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,372,769 - -0.0
2,373,422 + -1.8
2,373,429 - +0.1
2,373,429 - -0.6
2,373,447 - -0.1
2,373,474 + -2.5
2,373,485 + -0.2
2,373,493 - +0.1
2,373,545 - -0.4
2,373,604 + +0.6
2,373,606 - +1.0
2,373,612 - -0.3

Or see this region's nucleotide sequence