Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1598 and Dshi_1599 overlap by 4 nucleotides Dshi_1599 and Dshi_1600 are separated by 115 nucleotides Dshi_1600 and Dshi_1601 are separated by 146 nucleotides Dshi_1601 and Dshi_1602 are separated by 4 nucleotides
Dshi_1598: Dshi_1598 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,663,920 to 1,664,726
_1598
Dshi_1599: Dshi_1599 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 1,664,723 to 1,665,604
_1599
Dshi_1600: Dshi_1600 - Antibiotic biosynthesis monooxygenase (RefSeq), at 1,665,720 to 1,666,031
_1600
Dshi_1601: Dshi_1601 - ribosomal protein S9 (RefSeq), at 1,666,178 to 1,666,672
_1601
Dshi_1602: Dshi_1602 - ribosomal protein L13 (RefSeq), at 1,666,677 to 1,667,135
_1602
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-1
0
1 at 1664.910 kb on - strand, within Dshi_1599 at 1665.037 kb on - strand, within Dshi_1599 at 1665.337 kb on + strand, within Dshi_1599 at 1665.344 kb on + strand, within Dshi_1599 at 1665.409 kb on - strand, within Dshi_1599 at 1665.643 kb on + strand at 1665.798 kb on + strand, within Dshi_1600 at 1665.932 kb on + strand, within Dshi_1600 at 1666.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,664,910 - Dshi_1599 0.21 -1.1 1,665,037 - Dshi_1599 0.36 -0.3 1,665,337 + Dshi_1599 0.70 +0.1 1,665,344 + Dshi_1599 0.70 +0.0 1,665,409 - Dshi_1599 0.78 -0.8 1,665,643 + +1.0 1,665,798 + Dshi_1600 0.25 +0.2 1,665,932 + Dshi_1600 0.68 -0.8 1,666,021 - -0.7
Or see this region's nucleotide sequence