Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0745 and Dshi_0746 are separated by 97 nucleotides Dshi_0746 and Dshi_0747 are separated by 92 nucleotides Dshi_0747 and Dshi_0748 overlap by 8 nucleotides
Dshi_0745: Dshi_0745 - Redoxin domain protein (RefSeq), at 753,664 to 754,239
_0745
Dshi_0746: Dshi_0746 - MIP family channel protein (RefSeq), at 754,337 to 755,023
_0746
Dshi_0747: Dshi_0747 - lipoprotein releasing system, transmembrane protein, LolC/E family (RefSeq), at 755,116 to 756,402
_0747
Dshi_0748: Dshi_0748 - ABC transporter related (RefSeq), at 756,395 to 757,078
_0748
Position (kb)
755
756
757 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 754.223 kb on - strand at 754.223 kb on - strand at 754.337 kb on - strand at 754.469 kb on - strand, within Dshi_0746 at 754.475 kb on + strand, within Dshi_0746 at 754.483 kb on - strand, within Dshi_0746 at 754.486 kb on + strand, within Dshi_0746 at 754.549 kb on - strand, within Dshi_0746 at 754.554 kb on - strand, within Dshi_0746 at 754.629 kb on - strand, within Dshi_0746 at 754.654 kb on + strand, within Dshi_0746 at 754.658 kb on + strand, within Dshi_0746 at 754.707 kb on + strand, within Dshi_0746 at 754.913 kb on - strand, within Dshi_0746 at 754.935 kb on + strand, within Dshi_0746 at 754.937 kb on - strand, within Dshi_0746 at 754.962 kb on - strand at 754.991 kb on + strand at 754.996 kb on + strand at 755.030 kb on - strand at 757.073 kb on + strand at 757.073 kb on + strand at 757.073 kb on + strand at 757.073 kb on + strand at 757.081 kb on - strand at 757.148 kb on + strand at 757.156 kb on - strand at 757.170 kb on - strand at 757.193 kb on - strand at 757.234 kb on + strand at 757.302 kb on - strand at 757.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 754,223 - +1.0 754,223 - -3.1 754,337 - +0.2 754,469 - Dshi_0746 0.19 +0.0 754,475 + Dshi_0746 0.20 -2.6 754,483 - Dshi_0746 0.21 -0.1 754,486 + Dshi_0746 0.22 +0.3 754,549 - Dshi_0746 0.31 -0.4 754,554 - Dshi_0746 0.32 -0.2 754,629 - Dshi_0746 0.43 -0.0 754,654 + Dshi_0746 0.46 +1.0 754,658 + Dshi_0746 0.47 +0.3 754,707 + Dshi_0746 0.54 -1.5 754,913 - Dshi_0746 0.84 +0.7 754,935 + Dshi_0746 0.87 +0.8 754,937 - Dshi_0746 0.87 -0.1 754,962 - -0.3 754,991 + -1.3 754,996 + -0.9 755,030 - +0.8 757,073 + +0.1 757,073 + +0.0 757,073 + -1.5 757,073 + -0.4 757,081 - +0.4 757,148 + +1.6 757,156 - -0.8 757,170 - +0.1 757,193 - -1.1 757,234 + -1.4 757,302 - +0.7 757,348 + +0.7
Or see this region's nucleotide sequence