Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0747

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0745 and Dshi_0746 are separated by 97 nucleotidesDshi_0746 and Dshi_0747 are separated by 92 nucleotidesDshi_0747 and Dshi_0748 overlap by 8 nucleotides Dshi_0745: Dshi_0745 - Redoxin domain protein (RefSeq), at 753,664 to 754,239 _0745 Dshi_0746: Dshi_0746 - MIP family channel protein (RefSeq), at 754,337 to 755,023 _0746 Dshi_0747: Dshi_0747 - lipoprotein releasing system, transmembrane protein, LolC/E family (RefSeq), at 755,116 to 756,402 _0747 Dshi_0748: Dshi_0748 - ABC transporter related (RefSeq), at 756,395 to 757,078 _0748 Position (kb) 755 756 757Strain fitness (log2 ratio) -3 -2 -1 0 1at 754.223 kb on - strandat 754.223 kb on - strandat 754.337 kb on - strandat 754.469 kb on - strand, within Dshi_0746at 754.475 kb on + strand, within Dshi_0746at 754.483 kb on - strand, within Dshi_0746at 754.486 kb on + strand, within Dshi_0746at 754.549 kb on - strand, within Dshi_0746at 754.554 kb on - strand, within Dshi_0746at 754.629 kb on - strand, within Dshi_0746at 754.654 kb on + strand, within Dshi_0746at 754.658 kb on + strand, within Dshi_0746at 754.707 kb on + strand, within Dshi_0746at 754.913 kb on - strand, within Dshi_0746at 754.935 kb on + strand, within Dshi_0746at 754.937 kb on - strand, within Dshi_0746at 754.962 kb on - strandat 754.991 kb on + strandat 754.996 kb on + strandat 755.030 kb on - strandat 757.073 kb on + strandat 757.073 kb on + strandat 757.073 kb on + strandat 757.073 kb on + strandat 757.081 kb on - strandat 757.148 kb on + strandat 757.156 kb on - strandat 757.170 kb on - strandat 757.193 kb on - strandat 757.234 kb on + strandat 757.302 kb on - strandat 757.348 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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754,223 - +1.0
754,223 - -3.1
754,337 - +0.2
754,469 - Dshi_0746 0.19 +0.0
754,475 + Dshi_0746 0.20 -2.6
754,483 - Dshi_0746 0.21 -0.1
754,486 + Dshi_0746 0.22 +0.3
754,549 - Dshi_0746 0.31 -0.4
754,554 - Dshi_0746 0.32 -0.2
754,629 - Dshi_0746 0.43 -0.0
754,654 + Dshi_0746 0.46 +1.0
754,658 + Dshi_0746 0.47 +0.3
754,707 + Dshi_0746 0.54 -1.5
754,913 - Dshi_0746 0.84 +0.7
754,935 + Dshi_0746 0.87 +0.8
754,937 - Dshi_0746 0.87 -0.1
754,962 - -0.3
754,991 + -1.3
754,996 + -0.9
755,030 - +0.8
757,073 + +0.1
757,073 + +0.0
757,073 + -1.5
757,073 + -0.4
757,081 - +0.4
757,148 + +1.6
757,156 - -0.8
757,170 - +0.1
757,193 - -1.1
757,234 + -1.4
757,302 - +0.7
757,348 + +0.7

Or see this region's nucleotide sequence