Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0699

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0697 and Dshi_0698 are separated by 43 nucleotidesDshi_0698 and Dshi_0699 are separated by 0 nucleotidesDshi_0699 and Dshi_0700 are separated by 59 nucleotides Dshi_0697: Dshi_0697 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 703,665 to 704,675 _0697 Dshi_0698: Dshi_0698 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 704,719 to 705,225 _0698 Dshi_0699: Dshi_0699 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 705,226 to 706,539 _0699 Dshi_0700: Dshi_0700 - AMP-dependent synthetase and ligase (RefSeq), at 706,599 to 708,116 _0700 Position (kb) 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 704.230 kb on + strand, within Dshi_0697at 704.237 kb on + strand, within Dshi_0697at 704.237 kb on + strand, within Dshi_0697at 704.245 kb on - strand, within Dshi_0697at 704.359 kb on + strand, within Dshi_0697at 704.370 kb on + strand, within Dshi_0697at 704.445 kb on + strand, within Dshi_0697at 704.463 kb on - strand, within Dshi_0697at 704.464 kb on - strand, within Dshi_0697at 704.507 kb on - strand, within Dshi_0697at 704.543 kb on - strand, within Dshi_0697at 704.549 kb on + strand, within Dshi_0697at 704.549 kb on - strand, within Dshi_0697at 704.554 kb on + strand, within Dshi_0697at 704.555 kb on + strand, within Dshi_0697at 704.570 kb on + strand, within Dshi_0697at 704.575 kb on + strandat 704.657 kb on - strandat 704.775 kb on - strand, within Dshi_0698at 704.777 kb on + strand, within Dshi_0698at 704.782 kb on + strand, within Dshi_0698at 704.782 kb on + strand, within Dshi_0698at 704.792 kb on + strand, within Dshi_0698at 704.831 kb on + strand, within Dshi_0698at 704.859 kb on + strand, within Dshi_0698at 704.864 kb on - strand, within Dshi_0698at 704.869 kb on + strand, within Dshi_0698at 704.872 kb on - strand, within Dshi_0698at 704.963 kb on + strand, within Dshi_0698at 704.972 kb on - strand, within Dshi_0698at 705.003 kb on + strand, within Dshi_0698at 705.013 kb on + strand, within Dshi_0698at 705.028 kb on + strand, within Dshi_0698at 705.046 kb on - strand, within Dshi_0698at 705.052 kb on - strand, within Dshi_0698at 705.098 kb on + strand, within Dshi_0698at 705.101 kb on - strand, within Dshi_0698at 705.179 kb on - strandat 705.179 kb on - strandat 705.284 kb on - strandat 705.285 kb on + strandat 705.311 kb on - strandat 705.401 kb on + strand, within Dshi_0699at 705.543 kb on - strand, within Dshi_0699at 705.580 kb on - strand, within Dshi_0699at 705.610 kb on - strand, within Dshi_0699at 705.626 kb on - strand, within Dshi_0699at 706.010 kb on - strand, within Dshi_0699at 706.023 kb on + strand, within Dshi_0699at 706.183 kb on - strand, within Dshi_0699at 706.212 kb on + strand, within Dshi_0699at 706.315 kb on - strand, within Dshi_0699at 706.320 kb on - strand, within Dshi_0699at 706.325 kb on - strand, within Dshi_0699at 706.406 kb on - strand, within Dshi_0699at 706.453 kb on - strandat 706.453 kb on - strandat 706.535 kb on + strandat 706.557 kb on + strandat 706.557 kb on + strandat 706.557 kb on + strandat 706.565 kb on - strandat 706.565 kb on - strandat 706.565 kb on - strandat 706.565 kb on - strandat 706.624 kb on + strandat 706.627 kb on - strandat 706.715 kb on + strandat 706.741 kb on + strandat 706.745 kb on + strandat 706.745 kb on + strandat 706.753 kb on - strand, within Dshi_0700at 706.802 kb on + strand, within Dshi_0700at 706.820 kb on + strand, within Dshi_0700at 706.846 kb on + strand, within Dshi_0700at 706.880 kb on - strand, within Dshi_0700at 706.899 kb on + strand, within Dshi_0700at 706.931 kb on + strand, within Dshi_0700at 706.941 kb on - strand, within Dshi_0700at 706.947 kb on + strand, within Dshi_0700at 707.065 kb on - strand, within Dshi_0700at 707.084 kb on + strand, within Dshi_0700at 707.084 kb on + strand, within Dshi_0700at 707.084 kb on + strand, within Dshi_0700at 707.092 kb on - strand, within Dshi_0700at 707.163 kb on - strand, within Dshi_0700at 707.185 kb on - strand, within Dshi_0700at 707.211 kb on - strand, within Dshi_0700at 707.213 kb on + strand, within Dshi_0700at 707.224 kb on + strand, within Dshi_0700at 707.268 kb on + strand, within Dshi_0700at 707.400 kb on + strand, within Dshi_0700

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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704,230 + Dshi_0697 0.56 -1.3
704,237 + Dshi_0697 0.57 +0.2
704,237 + Dshi_0697 0.57 -2.1
704,245 - Dshi_0697 0.57 +0.4
704,359 + Dshi_0697 0.69 -1.2
704,370 + Dshi_0697 0.70 +0.6
704,445 + Dshi_0697 0.77 -0.2
704,463 - Dshi_0697 0.79 +0.7
704,464 - Dshi_0697 0.79 +3.3
704,507 - Dshi_0697 0.83 -1.3
704,543 - Dshi_0697 0.87 -0.4
704,549 + Dshi_0697 0.87 -0.8
704,549 - Dshi_0697 0.87 +0.9
704,554 + Dshi_0697 0.88 -0.1
704,555 + Dshi_0697 0.88 +0.5
704,570 + Dshi_0697 0.90 +0.3
704,575 + -0.6
704,657 - +0.3
704,775 - Dshi_0698 0.11 +0.7
704,777 + Dshi_0698 0.11 -1.1
704,782 + Dshi_0698 0.12 +1.8
704,782 + Dshi_0698 0.12 -0.2
704,792 + Dshi_0698 0.14 +0.3
704,831 + Dshi_0698 0.22 +0.0
704,859 + Dshi_0698 0.28 -0.5
704,864 - Dshi_0698 0.29 -0.5
704,869 + Dshi_0698 0.30 -2.3
704,872 - Dshi_0698 0.30 -0.1
704,963 + Dshi_0698 0.48 -0.3
704,972 - Dshi_0698 0.50 +0.2
705,003 + Dshi_0698 0.56 -0.5
705,013 + Dshi_0698 0.58 -0.8
705,028 + Dshi_0698 0.61 -0.4
705,046 - Dshi_0698 0.64 -0.1
705,052 - Dshi_0698 0.66 -1.4
705,098 + Dshi_0698 0.75 -0.5
705,101 - Dshi_0698 0.75 +0.9
705,179 - +1.2
705,179 - +0.5
705,284 - -0.8
705,285 + -0.3
705,311 - -0.3
705,401 + Dshi_0699 0.13 +0.1
705,543 - Dshi_0699 0.24 -0.3
705,580 - Dshi_0699 0.27 -0.8
705,610 - Dshi_0699 0.29 -0.6
705,626 - Dshi_0699 0.30 +0.4
706,010 - Dshi_0699 0.60 +0.5
706,023 + Dshi_0699 0.61 -0.3
706,183 - Dshi_0699 0.73 +0.1
706,212 + Dshi_0699 0.75 +0.7
706,315 - Dshi_0699 0.83 +0.2
706,320 - Dshi_0699 0.83 +0.9
706,325 - Dshi_0699 0.84 +0.3
706,406 - Dshi_0699 0.90 -2.5
706,453 - -1.0
706,453 - +0.5
706,535 + +0.5
706,557 + -1.0
706,557 + -2.2
706,557 + +0.4
706,565 - -0.1
706,565 - -0.2
706,565 - -0.7
706,565 - -0.0
706,624 + -1.0
706,627 - -0.9
706,715 + -0.7
706,741 + -0.9
706,745 + -3.2
706,745 + +1.0
706,753 - Dshi_0700 0.10 +0.4
706,802 + Dshi_0700 0.13 -0.8
706,820 + Dshi_0700 0.15 +0.2
706,846 + Dshi_0700 0.16 -0.2
706,880 - Dshi_0700 0.19 -0.8
706,899 + Dshi_0700 0.20 +0.3
706,931 + Dshi_0700 0.22 -0.9
706,941 - Dshi_0700 0.23 +0.2
706,947 + Dshi_0700 0.23 -0.1
707,065 - Dshi_0700 0.31 +0.5
707,084 + Dshi_0700 0.32 -1.5
707,084 + Dshi_0700 0.32 -1.8
707,084 + Dshi_0700 0.32 +0.0
707,092 - Dshi_0700 0.32 -0.5
707,163 - Dshi_0700 0.37 +0.9
707,185 - Dshi_0700 0.39 -0.9
707,211 - Dshi_0700 0.40 -0.9
707,213 + Dshi_0700 0.40 -1.8
707,224 + Dshi_0700 0.41 -0.9
707,268 + Dshi_0700 0.44 -0.1
707,400 + Dshi_0700 0.53 -1.4

Or see this region's nucleotide sequence