Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0529

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0528 and Dshi_0529 are separated by 13 nucleotidesDshi_0529 and Dshi_0530 overlap by 4 nucleotides Dshi_0528: Dshi_0528 - Monosaccharide-transporting ATPase (RefSeq), at 512,265 to 513,269 _0528 Dshi_0529: Dshi_0529 - Monosaccharide-transporting ATPase (RefSeq), at 513,283 to 514,284 _0529 Dshi_0530: Dshi_0530 - ABC transporter related (RefSeq), at 514,281 to 515,777 _0530 Position (kb) 513 514 515Strain fitness (log2 ratio) -2 -1 0 1 2at 512.286 kb on + strandat 512.289 kb on + strandat 512.311 kb on + strandat 512.331 kb on + strandat 512.349 kb on - strandat 512.352 kb on - strandat 512.352 kb on - strandat 512.375 kb on + strand, within Dshi_0528at 512.398 kb on + strand, within Dshi_0528at 512.406 kb on + strand, within Dshi_0528at 512.415 kb on - strand, within Dshi_0528at 512.427 kb on + strand, within Dshi_0528at 512.435 kb on - strand, within Dshi_0528at 512.447 kb on - strand, within Dshi_0528at 512.463 kb on - strand, within Dshi_0528at 512.470 kb on - strand, within Dshi_0528at 512.470 kb on - strand, within Dshi_0528at 512.502 kb on - strand, within Dshi_0528at 512.504 kb on + strand, within Dshi_0528at 512.596 kb on + strand, within Dshi_0528at 512.597 kb on - strand, within Dshi_0528at 512.614 kb on - strand, within Dshi_0528at 512.637 kb on - strand, within Dshi_0528at 512.691 kb on + strand, within Dshi_0528at 512.699 kb on - strand, within Dshi_0528at 512.715 kb on + strand, within Dshi_0528at 512.732 kb on + strand, within Dshi_0528at 512.738 kb on - strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.796 kb on + strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.804 kb on - strand, within Dshi_0528at 512.851 kb on - strand, within Dshi_0528at 512.862 kb on - strand, within Dshi_0528at 512.932 kb on + strand, within Dshi_0528at 512.939 kb on + strand, within Dshi_0528at 512.939 kb on + strand, within Dshi_0528at 512.947 kb on - strand, within Dshi_0528at 512.965 kb on - strandat 513.056 kb on + strand, within Dshi_0528at 513.093 kb on + strand, within Dshi_0528at 513.093 kb on + strand, within Dshi_0528at 513.102 kb on - strand, within Dshi_0528at 513.190 kb on - strandat 513.231 kb on - strandat 513.342 kb on + strandat 513.355 kb on + strandat 513.411 kb on - strand, within Dshi_0529at 513.411 kb on - strand, within Dshi_0529at 513.466 kb on + strand, within Dshi_0529at 513.489 kb on - strand, within Dshi_0529at 513.523 kb on - strand, within Dshi_0529at 513.539 kb on + strand, within Dshi_0529at 513.580 kb on + strand, within Dshi_0529at 513.580 kb on + strand, within Dshi_0529at 513.602 kb on - strand, within Dshi_0529at 513.630 kb on - strand, within Dshi_0529at 513.650 kb on - strand, within Dshi_0529at 513.710 kb on + strand, within Dshi_0529at 513.715 kb on + strand, within Dshi_0529at 513.749 kb on + strand, within Dshi_0529at 513.757 kb on - strand, within Dshi_0529at 513.785 kb on - strand, within Dshi_0529at 513.834 kb on + strand, within Dshi_0529at 513.834 kb on + strand, within Dshi_0529at 513.885 kb on - strand, within Dshi_0529at 513.900 kb on + strand, within Dshi_0529at 513.900 kb on + strand, within Dshi_0529at 513.902 kb on + strand, within Dshi_0529at 513.910 kb on - strand, within Dshi_0529at 513.920 kb on - strand, within Dshi_0529at 513.933 kb on - strand, within Dshi_0529at 513.955 kb on + strand, within Dshi_0529at 513.962 kb on - strand, within Dshi_0529at 513.963 kb on - strand, within Dshi_0529at 513.963 kb on - strand, within Dshi_0529at 513.968 kb on - strand, within Dshi_0529at 513.975 kb on + strand, within Dshi_0529at 513.999 kb on - strand, within Dshi_0529at 514.003 kb on + strand, within Dshi_0529at 514.008 kb on + strand, within Dshi_0529at 514.011 kb on - strand, within Dshi_0529at 514.011 kb on - strand, within Dshi_0529at 514.067 kb on + strand, within Dshi_0529at 514.067 kb on - strand, within Dshi_0529at 514.080 kb on + strand, within Dshi_0529at 514.196 kb on - strandat 514.211 kb on - strandat 514.334 kb on - strandat 514.352 kb on - strandat 514.493 kb on + strand, within Dshi_0530at 514.493 kb on + strand, within Dshi_0530at 514.493 kb on + strand, within Dshi_0530at 514.501 kb on - strand, within Dshi_0530at 514.501 kb on - strand, within Dshi_0530at 514.517 kb on + strand, within Dshi_0530at 514.525 kb on - strand, within Dshi_0530at 514.525 kb on - strand, within Dshi_0530at 514.718 kb on + strand, within Dshi_0530at 514.718 kb on + strand, within Dshi_0530at 514.721 kb on - strand, within Dshi_0530at 514.721 kb on - strand, within Dshi_0530at 514.755 kb on - strand, within Dshi_0530at 514.819 kb on - strand, within Dshi_0530at 514.839 kb on + strand, within Dshi_0530at 514.844 kb on + strand, within Dshi_0530at 514.978 kb on + strand, within Dshi_0530at 514.992 kb on - strand, within Dshi_0530at 514.996 kb on - strand, within Dshi_0530at 515.047 kb on - strand, within Dshi_0530at 515.047 kb on - strand, within Dshi_0530at 515.076 kb on + strand, within Dshi_0530at 515.125 kb on + strand, within Dshi_0530at 515.125 kb on + strand, within Dshi_0530at 515.170 kb on - strand, within Dshi_0530at 515.272 kb on + strand, within Dshi_0530

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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512,286 + -1.1
512,289 + -2.6
512,311 + -0.2
512,331 + -1.2
512,349 - +0.4
512,352 - +1.6
512,352 - +0.7
512,375 + Dshi_0528 0.11 -1.0
512,398 + Dshi_0528 0.13 -1.2
512,406 + Dshi_0528 0.14 -0.4
512,415 - Dshi_0528 0.15 -1.9
512,427 + Dshi_0528 0.16 +1.0
512,435 - Dshi_0528 0.17 -1.9
512,447 - Dshi_0528 0.18 -0.2
512,463 - Dshi_0528 0.20 -0.3
512,470 - Dshi_0528 0.20 +0.1
512,470 - Dshi_0528 0.20 +0.6
512,502 - Dshi_0528 0.24 +0.5
512,504 + Dshi_0528 0.24 -0.3
512,596 + Dshi_0528 0.33 +1.1
512,597 - Dshi_0528 0.33 +0.2
512,614 - Dshi_0528 0.35 -0.1
512,637 - Dshi_0528 0.37 -0.5
512,691 + Dshi_0528 0.42 +0.2
512,699 - Dshi_0528 0.43 -1.0
512,715 + Dshi_0528 0.45 -0.4
512,732 + Dshi_0528 0.46 +1.0
512,738 - Dshi_0528 0.47 +1.8
512,796 + Dshi_0528 0.53 -0.2
512,796 + Dshi_0528 0.53 +0.1
512,796 + Dshi_0528 0.53 +0.4
512,804 - Dshi_0528 0.54 -0.3
512,804 - Dshi_0528 0.54 -0.5
512,804 - Dshi_0528 0.54 -1.1
512,804 - Dshi_0528 0.54 +0.5
512,804 - Dshi_0528 0.54 +0.7
512,851 - Dshi_0528 0.58 +0.2
512,862 - Dshi_0528 0.59 -1.4
512,932 + Dshi_0528 0.66 +0.5
512,939 + Dshi_0528 0.67 +0.3
512,939 + Dshi_0528 0.67 +0.1
512,947 - Dshi_0528 0.68 +0.2
512,965 - +1.7
513,056 + Dshi_0528 0.79 -1.7
513,093 + Dshi_0528 0.82 +0.4
513,093 + Dshi_0528 0.82 -0.1
513,102 - Dshi_0528 0.83 -0.7
513,190 - -0.7
513,231 - -1.5
513,342 + -1.8
513,355 + -0.6
513,411 - Dshi_0529 0.13 -0.1
513,411 - Dshi_0529 0.13 +0.5
513,466 + Dshi_0529 0.18 -0.4
513,489 - Dshi_0529 0.21 +0.1
513,523 - Dshi_0529 0.24 +0.8
513,539 + Dshi_0529 0.26 -0.2
513,580 + Dshi_0529 0.30 -1.6
513,580 + Dshi_0529 0.30 -2.0
513,602 - Dshi_0529 0.32 -1.1
513,630 - Dshi_0529 0.35 -0.8
513,650 - Dshi_0529 0.37 -0.2
513,710 + Dshi_0529 0.43 -0.7
513,715 + Dshi_0529 0.43 -1.2
513,749 + Dshi_0529 0.47 -1.0
513,757 - Dshi_0529 0.47 -0.7
513,785 - Dshi_0529 0.50 -1.1
513,834 + Dshi_0529 0.55 +0.6
513,834 + Dshi_0529 0.55 -0.9
513,885 - Dshi_0529 0.60 -0.2
513,900 + Dshi_0529 0.62 -1.7
513,900 + Dshi_0529 0.62 -1.5
513,902 + Dshi_0529 0.62 +0.3
513,910 - Dshi_0529 0.63 +0.3
513,920 - Dshi_0529 0.64 -0.0
513,933 - Dshi_0529 0.65 -1.5
513,955 + Dshi_0529 0.67 +1.9
513,962 - Dshi_0529 0.68 +1.0
513,963 - Dshi_0529 0.68 +0.7
513,963 - Dshi_0529 0.68 -1.3
513,968 - Dshi_0529 0.68 -0.7
513,975 + Dshi_0529 0.69 -0.1
513,999 - Dshi_0529 0.71 -0.9
514,003 + Dshi_0529 0.72 +0.1
514,008 + Dshi_0529 0.72 -1.4
514,011 - Dshi_0529 0.73 -0.3
514,011 - Dshi_0529 0.73 +0.5
514,067 + Dshi_0529 0.78 -0.4
514,067 - Dshi_0529 0.78 -2.0
514,080 + Dshi_0529 0.80 +0.5
514,196 - -0.6
514,211 - -0.1
514,334 - +0.3
514,352 - -1.7
514,493 + Dshi_0530 0.14 -0.2
514,493 + Dshi_0530 0.14 -0.8
514,493 + Dshi_0530 0.14 +0.7
514,501 - Dshi_0530 0.15 -0.2
514,501 - Dshi_0530 0.15 -0.1
514,517 + Dshi_0530 0.16 +2.4
514,525 - Dshi_0530 0.16 +1.2
514,525 - Dshi_0530 0.16 -0.9
514,718 + Dshi_0530 0.29 -0.7
514,718 + Dshi_0530 0.29 -1.4
514,721 - Dshi_0530 0.29 -0.8
514,721 - Dshi_0530 0.29 +1.4
514,755 - Dshi_0530 0.32 +0.4
514,819 - Dshi_0530 0.36 -1.2
514,839 + Dshi_0530 0.37 -1.0
514,844 + Dshi_0530 0.38 +0.2
514,978 + Dshi_0530 0.47 +0.9
514,992 - Dshi_0530 0.47 +0.8
514,996 - Dshi_0530 0.48 -0.3
515,047 - Dshi_0530 0.51 +2.1
515,047 - Dshi_0530 0.51 +0.4
515,076 + Dshi_0530 0.53 +0.8
515,125 + Dshi_0530 0.56 +0.8
515,125 + Dshi_0530 0.56 +0.2
515,170 - Dshi_0530 0.59 +1.0
515,272 + Dshi_0530 0.66 -0.0

Or see this region's nucleotide sequence