Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0395 and Dshi_0396 are separated by 178 nucleotides Dshi_0396 and Dshi_0397 are separated by 96 nucleotides
Dshi_0395: Dshi_0395 - integrase family protein (RefSeq), at 384,765 to 385,958
_0395
Dshi_0396: Dshi_0396 - Recombinase (RefSeq), at 386,137 to 387,813
_0396
Dshi_0397: Dshi_0397 - integrase family protein (RefSeq), at 387,910 to 388,986
_0397
Position (kb) 386
387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 385.138 kb on + strand, within Dshi_0395 at 385.143 kb on + strand, within Dshi_0395 at 385.184 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.199 kb on + strand, within Dshi_0395 at 385.204 kb on + strand, within Dshi_0395 at 385.204 kb on + strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.207 kb on - strand, within Dshi_0395 at 385.279 kb on + strand, within Dshi_0395 at 385.279 kb on + strand, within Dshi_0395 at 385.280 kb on + strand, within Dshi_0395 at 385.280 kb on + strand, within Dshi_0395 at 385.307 kb on - strand, within Dshi_0395 at 385.319 kb on - strand, within Dshi_0395 at 385.357 kb on - strand, within Dshi_0395 at 385.402 kb on + strand, within Dshi_0395 at 385.403 kb on + strand, within Dshi_0395 at 385.403 kb on + strand, within Dshi_0395 at 385.410 kb on - strand, within Dshi_0395 at 385.418 kb on + strand, within Dshi_0395 at 385.449 kb on - strand, within Dshi_0395 at 385.492 kb on - strand, within Dshi_0395 at 385.492 kb on - strand, within Dshi_0395 at 385.517 kb on - strand, within Dshi_0395 at 385.555 kb on + strand, within Dshi_0395 at 385.557 kb on + strand, within Dshi_0395 at 385.565 kb on - strand, within Dshi_0395 at 385.609 kb on + strand, within Dshi_0395 at 385.609 kb on + strand, within Dshi_0395 at 385.609 kb on + strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.617 kb on - strand, within Dshi_0395 at 385.623 kb on - strand, within Dshi_0395 at 385.628 kb on + strand, within Dshi_0395 at 385.730 kb on - strand, within Dshi_0395 at 385.777 kb on + strand, within Dshi_0395 at 385.777 kb on + strand, within Dshi_0395 at 385.777 kb on + strand, within Dshi_0395 at 385.876 kb on + strand at 385.876 kb on - strand at 385.877 kb on + strand at 385.883 kb on - strand at 385.919 kb on - strand at 385.966 kb on + strand at 385.974 kb on - strand at 385.976 kb on + strand at 385.984 kb on - strand at 386.086 kb on + strand at 386.091 kb on + strand at 386.091 kb on + strand at 386.091 kb on + strand at 386.099 kb on - strand at 386.099 kb on - strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.101 kb on + strand at 386.109 kb on - strand at 386.207 kb on - strand at 386.265 kb on + strand at 386.265 kb on + strand at 386.265 kb on + strand at 386.273 kb on - strand at 386.273 kb on - strand at 386.340 kb on + strand, within Dshi_0396 at 386.378 kb on + strand, within Dshi_0396 at 386.378 kb on + strand, within Dshi_0396 at 386.378 kb on + strand, within Dshi_0396 at 386.385 kb on - strand, within Dshi_0396 at 386.386 kb on - strand, within Dshi_0396 at 386.427 kb on - strand, within Dshi_0396 at 386.434 kb on + strand, within Dshi_0396 at 386.442 kb on - strand, within Dshi_0396 at 386.442 kb on - strand, within Dshi_0396 at 386.442 kb on - strand, within Dshi_0396 at 386.503 kb on - strand, within Dshi_0396 at 386.503 kb on - strand, within Dshi_0396 at 386.529 kb on + strand, within Dshi_0396 at 386.532 kb on - strand, within Dshi_0396 at 386.642 kb on - strand, within Dshi_0396 at 386.688 kb on + strand, within Dshi_0396 at 386.688 kb on + strand, within Dshi_0396 at 386.696 kb on - strand, within Dshi_0396 at 386.711 kb on - strand, within Dshi_0396 at 386.721 kb on + strand, within Dshi_0396 at 386.727 kb on - strand, within Dshi_0396 at 386.756 kb on + strand, within Dshi_0396 at 386.777 kb on - strand, within Dshi_0396 at 386.802 kb on + strand, within Dshi_0396 at 386.802 kb on + strand, within Dshi_0396 at 386.805 kb on - strand, within Dshi_0396 at 386.810 kb on - strand, within Dshi_0396 at 386.821 kb on - strand, within Dshi_0396 at 386.835 kb on - strand, within Dshi_0396 at 386.836 kb on - strand, within Dshi_0396 at 386.920 kb on - strand, within Dshi_0396 at 386.936 kb on - strand, within Dshi_0396 at 386.966 kb on - strand, within Dshi_0396 at 386.967 kb on + strand, within Dshi_0396 at 387.011 kb on - strand, within Dshi_0396 at 387.021 kb on - strand, within Dshi_0396 at 387.084 kb on - strand, within Dshi_0396 at 387.155 kb on - strand, within Dshi_0396 at 387.182 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.203 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.250 kb on - strand, within Dshi_0396 at 387.260 kb on - strand, within Dshi_0396 at 387.274 kb on + strand, within Dshi_0396 at 387.315 kb on + strand, within Dshi_0396 at 387.323 kb on - strand, within Dshi_0396 at 387.373 kb on + strand, within Dshi_0396 at 387.375 kb on - strand, within Dshi_0396 at 387.493 kb on - strand, within Dshi_0396 at 387.520 kb on + strand, within Dshi_0396 at 387.520 kb on - strand, within Dshi_0396 at 387.528 kb on + strand, within Dshi_0396 at 387.531 kb on - strand, within Dshi_0396 at 387.552 kb on - strand, within Dshi_0396 at 387.606 kb on + strand, within Dshi_0396 at 387.612 kb on - strand, within Dshi_0396 at 387.666 kb on + strand at 387.666 kb on + strand at 387.666 kb on + strand at 387.674 kb on - strand at 387.675 kb on - strand at 387.706 kb on + strand at 387.708 kb on - strand at 387.714 kb on - strand at 387.784 kb on - strand at 387.806 kb on - strand at 387.806 kb on - strand at 387.812 kb on + strand at 387.820 kb on - strand at 387.825 kb on - strand at 387.826 kb on - strand at 387.829 kb on + strand at 387.830 kb on + strand at 387.831 kb on - strand at 387.842 kb on - strand at 387.885 kb on + strand at 387.893 kb on + strand at 387.917 kb on - strand at 387.946 kb on - strand at 387.986 kb on - strand at 387.989 kb on + strand at 387.989 kb on + strand at 387.996 kb on + strand at 387.996 kb on - strand at 388.007 kb on - strand at 388.009 kb on + strand at 388.017 kb on - strand at 388.030 kb on + strand, within Dshi_0397 at 388.030 kb on + strand, within Dshi_0397 at 388.086 kb on + strand, within Dshi_0397 at 388.134 kb on + strand, within Dshi_0397 at 388.134 kb on - strand, within Dshi_0397 at 388.142 kb on - strand, within Dshi_0397 at 388.149 kb on + strand, within Dshi_0397 at 388.199 kb on - strand, within Dshi_0397 at 388.241 kb on - strand, within Dshi_0397 at 388.258 kb on - strand, within Dshi_0397 at 388.299 kb on + strand, within Dshi_0397 at 388.328 kb on - strand, within Dshi_0397 at 388.367 kb on - strand, within Dshi_0397 at 388.403 kb on + strand, within Dshi_0397 at 388.405 kb on + strand, within Dshi_0397 at 388.413 kb on - strand, within Dshi_0397 at 388.451 kb on + strand, within Dshi_0397 at 388.519 kb on + strand, within Dshi_0397 at 388.564 kb on + strand, within Dshi_0397 at 388.630 kb on - strand, within Dshi_0397 at 388.634 kb on + strand, within Dshi_0397 at 388.643 kb on + strand, within Dshi_0397 at 388.670 kb on + strand, within Dshi_0397 at 388.713 kb on - strand, within Dshi_0397 at 388.719 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.788 kb on + strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.796 kb on - strand, within Dshi_0397 at 388.808 kb on + strand, within Dshi_0397
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 385,138 + Dshi_0395 0.31 +0.0 385,143 + Dshi_0395 0.32 -2.2 385,184 + Dshi_0395 0.35 -0.1 385,199 + Dshi_0395 0.36 -0.9 385,199 + Dshi_0395 0.36 -0.0 385,199 + Dshi_0395 0.36 +0.9 385,199 + Dshi_0395 0.36 +0.3 385,199 + Dshi_0395 0.36 -0.1 385,199 + Dshi_0395 0.36 +0.4 385,199 + Dshi_0395 0.36 -0.1 385,199 + Dshi_0395 0.36 -1.3 385,204 + Dshi_0395 0.37 -0.2 385,204 + Dshi_0395 0.37 +0.3 385,207 - Dshi_0395 0.37 -2.5 385,207 - Dshi_0395 0.37 +0.1 385,207 - Dshi_0395 0.37 -2.6 385,207 - Dshi_0395 0.37 -1.0 385,279 + Dshi_0395 0.43 +0.2 385,279 + Dshi_0395 0.43 -2.8 385,280 + Dshi_0395 0.43 +0.1 385,280 + Dshi_0395 0.43 +1.2 385,307 - Dshi_0395 0.45 +0.2 385,319 - Dshi_0395 0.46 +0.8 385,357 - Dshi_0395 0.50 +0.9 385,402 + Dshi_0395 0.53 -0.0 385,403 + Dshi_0395 0.53 -0.7 385,403 + Dshi_0395 0.53 -2.0 385,410 - Dshi_0395 0.54 +1.0 385,418 + Dshi_0395 0.55 +0.4 385,449 - Dshi_0395 0.57 -0.0 385,492 - Dshi_0395 0.61 -1.1 385,492 - Dshi_0395 0.61 -1.8 385,517 - Dshi_0395 0.63 -1.8 385,555 + Dshi_0395 0.66 -1.0 385,557 + Dshi_0395 0.66 +0.1 385,565 - Dshi_0395 0.67 -0.1 385,609 + Dshi_0395 0.71 -0.4 385,609 + Dshi_0395 0.71 -1.0 385,609 + Dshi_0395 0.71 -0.0 385,617 - Dshi_0395 0.71 -0.3 385,617 - Dshi_0395 0.71 -0.2 385,617 - Dshi_0395 0.71 -0.3 385,617 - Dshi_0395 0.71 -0.0 385,623 - Dshi_0395 0.72 -0.8 385,628 + Dshi_0395 0.72 -1.0 385,730 - Dshi_0395 0.81 -0.4 385,777 + Dshi_0395 0.85 +0.1 385,777 + Dshi_0395 0.85 +0.5 385,777 + Dshi_0395 0.85 -0.4 385,876 + +0.4 385,876 - +0.7 385,877 + +0.7 385,883 - +0.4 385,919 - +1.1 385,966 + +1.4 385,974 - -0.9 385,976 + +0.9 385,984 - -0.5 386,086 + -0.5 386,091 + -0.2 386,091 + -0.0 386,091 + -0.3 386,099 - +0.3 386,099 - -2.5 386,101 + -2.8 386,101 + +0.5 386,101 + +1.1 386,101 + -0.1 386,101 + -1.4 386,109 - +0.3 386,207 - -0.0 386,265 + -0.8 386,265 + +0.2 386,265 + -0.9 386,273 - +0.1 386,273 - +1.7 386,340 + Dshi_0396 0.12 +1.0 386,378 + Dshi_0396 0.14 +0.1 386,378 + Dshi_0396 0.14 -0.9 386,378 + Dshi_0396 0.14 +0.5 386,385 - Dshi_0396 0.15 +0.1 386,386 - Dshi_0396 0.15 +0.6 386,427 - Dshi_0396 0.17 +0.4 386,434 + Dshi_0396 0.18 -1.0 386,442 - Dshi_0396 0.18 -0.4 386,442 - Dshi_0396 0.18 -0.1 386,442 - Dshi_0396 0.18 -0.5 386,503 - Dshi_0396 0.22 -1.1 386,503 - Dshi_0396 0.22 +1.1 386,529 + Dshi_0396 0.23 +0.1 386,532 - Dshi_0396 0.24 -0.3 386,642 - Dshi_0396 0.30 +0.1 386,688 + Dshi_0396 0.33 +0.1 386,688 + Dshi_0396 0.33 -0.1 386,696 - Dshi_0396 0.33 -1.7 386,711 - Dshi_0396 0.34 -1.1 386,721 + Dshi_0396 0.35 +3.0 386,727 - Dshi_0396 0.35 -1.5 386,756 + Dshi_0396 0.37 +0.1 386,777 - Dshi_0396 0.38 +0.9 386,802 + Dshi_0396 0.40 -0.9 386,802 + Dshi_0396 0.40 -1.7 386,805 - Dshi_0396 0.40 +0.7 386,810 - Dshi_0396 0.40 -0.8 386,821 - Dshi_0396 0.41 +1.0 386,835 - Dshi_0396 0.42 -0.7 386,836 - Dshi_0396 0.42 -1.4 386,920 - Dshi_0396 0.47 -0.4 386,936 - Dshi_0396 0.48 +0.7 386,966 - Dshi_0396 0.49 -1.4 386,967 + Dshi_0396 0.49 -0.9 387,011 - Dshi_0396 0.52 +0.4 387,021 - Dshi_0396 0.53 -2.5 387,084 - Dshi_0396 0.56 -0.8 387,155 - Dshi_0396 0.61 -0.2 387,182 - Dshi_0396 0.62 +0.1 387,203 - Dshi_0396 0.64 -0.2 387,203 - Dshi_0396 0.64 -1.2 387,250 - Dshi_0396 0.66 -2.4 387,250 - Dshi_0396 0.66 -0.4 387,250 - Dshi_0396 0.66 -1.1 387,250 - Dshi_0396 0.66 -0.8 387,260 - Dshi_0396 0.67 +0.2 387,274 + Dshi_0396 0.68 -0.5 387,315 + Dshi_0396 0.70 -0.6 387,323 - Dshi_0396 0.71 -2.2 387,373 + Dshi_0396 0.74 +0.1 387,375 - Dshi_0396 0.74 -1.0 387,493 - Dshi_0396 0.81 -1.3 387,520 + Dshi_0396 0.82 -0.3 387,520 - Dshi_0396 0.82 -1.9 387,528 + Dshi_0396 0.83 -0.4 387,531 - Dshi_0396 0.83 -0.2 387,552 - Dshi_0396 0.84 +0.5 387,606 + Dshi_0396 0.88 -0.4 387,612 - Dshi_0396 0.88 -0.5 387,666 + +0.1 387,666 + +0.8 387,666 + +0.1 387,674 - -1.0 387,675 - -2.3 387,706 + -0.9 387,708 - +0.1 387,714 - -0.3 387,784 - -0.4 387,806 - +1.1 387,806 - +0.2 387,812 + +0.3 387,820 - +0.2 387,825 - -0.6 387,826 - -2.2 387,829 + -1.9 387,830 + +0.2 387,831 - -2.7 387,842 - -1.1 387,885 + -1.9 387,893 + -0.4 387,917 - +0.7 387,946 - -0.8 387,986 - -0.9 387,989 + -0.1 387,989 + +0.4 387,996 + -0.7 387,996 - +0.3 388,007 - +1.1 388,009 + -0.0 388,017 - +0.8 388,030 + Dshi_0397 0.11 -0.1 388,030 + Dshi_0397 0.11 +0.7 388,086 + Dshi_0397 0.16 -1.1 388,134 + Dshi_0397 0.21 +0.8 388,134 - Dshi_0397 0.21 -0.3 388,142 - Dshi_0397 0.22 -0.4 388,149 + Dshi_0397 0.22 +0.1 388,199 - Dshi_0397 0.27 -0.5 388,241 - Dshi_0397 0.31 +0.1 388,258 - Dshi_0397 0.32 -0.1 388,299 + Dshi_0397 0.36 -0.9 388,328 - Dshi_0397 0.39 +0.5 388,367 - Dshi_0397 0.42 +0.1 388,403 + Dshi_0397 0.46 +0.3 388,405 + Dshi_0397 0.46 +0.8 388,413 - Dshi_0397 0.47 +0.2 388,451 + Dshi_0397 0.50 +1.3 388,519 + Dshi_0397 0.57 -2.5 388,564 + Dshi_0397 0.61 +0.7 388,630 - Dshi_0397 0.67 -1.9 388,634 + Dshi_0397 0.67 -1.4 388,643 + Dshi_0397 0.68 +0.7 388,670 + Dshi_0397 0.71 -0.1 388,713 - Dshi_0397 0.75 -0.4 388,719 + Dshi_0397 0.75 -1.7 388,788 + Dshi_0397 0.82 -0.9 388,788 + Dshi_0397 0.82 +1.1 388,788 + Dshi_0397 0.82 -2.7 388,796 - Dshi_0397 0.82 -2.2 388,796 - Dshi_0397 0.82 +0.5 388,796 - Dshi_0397 0.82 -0.4 388,796 - Dshi_0397 0.82 -1.1 388,796 - Dshi_0397 0.82 -0.1 388,796 - Dshi_0397 0.82 -1.1 388,808 + Dshi_0397 0.83 -0.5
Or see this region's nucleotide sequence