Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_940 and HP15_941 are separated by 302 nucleotides HP15_941 and HP15_942 are separated by 255 nucleotides HP15_942 and HP15_943 are separated by 75 nucleotides
HP15_940: HP15_940 - putrescine ABC transporter, periplasmic putrescine-binding protein, at 955,039 to 956,145
_940
HP15_941: HP15_941 - conserved hypothetical protein, secreted, at 956,448 to 956,774
_941
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
Position (kb) 957
958
959 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 956.100 kb on + strand at 956.101 kb on + strand at 956.108 kb on - strand at 956.134 kb on - strand at 956.201 kb on + strand at 956.201 kb on + strand at 956.206 kb on + strand at 956.206 kb on + strand at 956.211 kb on + strand at 956.214 kb on - strand at 956.214 kb on - strand at 956.219 kb on - strand at 956.237 kb on + strand at 956.260 kb on - strand at 956.273 kb on - strand at 956.284 kb on - strand at 956.310 kb on - strand at 956.422 kb on - strand at 956.465 kb on + strand at 956.571 kb on + strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.624 kb on + strand, within HP15_941 at 956.671 kb on - strand, within HP15_941 at 956.730 kb on + strand, within HP15_941 at 956.873 kb on + strand at 956.956 kb on + strand at 956.956 kb on + strand at 956.968 kb on + strand at 956.976 kb on - strand at 957.256 kb on - strand, within HP15_942 at 957.298 kb on + strand, within HP15_942 at 957.306 kb on - strand, within HP15_942 at 957.468 kb on - strand, within HP15_942 at 957.548 kb on + strand, within HP15_942 at 957.607 kb on + strand, within HP15_942 at 957.683 kb on - strand, within HP15_942 at 957.750 kb on + strand, within HP15_942 at 957.813 kb on + strand, within HP15_942 at 957.843 kb on + strand, within HP15_942 at 957.881 kb on + strand, within HP15_942 at 957.950 kb on - strand, within HP15_942 at 958.165 kb on + strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.173 kb on - strand, within HP15_942 at 958.184 kb on - strand, within HP15_942 at 958.221 kb on - strand, within HP15_942 at 958.462 kb on + strand at 958.462 kb on + strand at 958.551 kb on - strand at 958.634 kb on - strand, within HP15_943 at 958.796 kb on - strand, within HP15_943 at 958.807 kb on + strand, within HP15_943 at 959.070 kb on + strand, within HP15_943 at 959.208 kb on - strand, within HP15_943 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 956,100 + -1.2 956,101 + -0.2 956,108 - -0.8 956,134 - +0.3 956,201 + -2.2 956,201 + +1.2 956,206 + -0.8 956,206 + +0.2 956,211 + -0.8 956,214 - -0.8 956,214 - -0.1 956,219 - +2.3 956,237 + +0.5 956,260 - -1.2 956,273 - -0.7 956,284 - -0.1 956,310 - +0.2 956,422 - +1.8 956,465 + -1.7 956,571 + HP15_941 0.38 +0.2 956,574 - HP15_941 0.39 -2.2 956,574 - HP15_941 0.39 -1.3 956,624 + HP15_941 0.54 -0.1 956,671 - HP15_941 0.68 -0.3 956,730 + HP15_941 0.86 +0.1 956,873 + -0.6 956,956 + -0.0 956,956 + +0.1 956,968 + -0.6 956,976 - -2.6 957,256 - HP15_942 0.17 -0.7 957,298 + HP15_942 0.20 -0.3 957,306 - HP15_942 0.20 -0.8 957,468 - HP15_942 0.32 +3.5 957,548 + HP15_942 0.38 +0.0 957,607 + HP15_942 0.42 +0.7 957,683 - HP15_942 0.48 -1.3 957,750 + HP15_942 0.53 +0.5 957,813 + HP15_942 0.57 -0.8 957,843 + HP15_942 0.60 -1.6 957,881 + HP15_942 0.62 +0.7 957,950 - HP15_942 0.67 -0.8 958,165 + HP15_942 0.83 -0.9 958,173 - HP15_942 0.84 +1.5 958,173 - HP15_942 0.84 -0.5 958,184 - HP15_942 0.85 -1.1 958,221 - HP15_942 0.87 -2.2 958,462 + -0.6 958,462 + -1.0 958,551 - -0.2 958,634 - HP15_943 0.11 -0.5 958,796 - HP15_943 0.21 +1.5 958,807 + HP15_943 0.22 -0.6 959,070 + HP15_943 0.40 +1.5 959,208 - HP15_943 0.49 -0.6 959,261 - HP15_943 0.52 -0.5 959,341 + HP15_943 0.57 -0.9 959,349 - HP15_943 0.58 +0.2 959,360 + HP15_943 0.59 -1.1
Or see this region's nucleotide sequence