Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_928 and HP15_929 are separated by 45 nucleotides HP15_929 and HP15_930 are separated by 2 nucleotides HP15_930 and HP15_931 are separated by 81 nucleotides HP15_931 and HP15_932 are separated by 113 nucleotides
HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907
_928
HP15_929: HP15_929 - branched-chain amino acid ABC transporter, permease protein, at 942,953 to 943,900
_929
HP15_930: HP15_930 - branched-chain amino acid transport permease, at 943,903 to 944,898
_930
HP15_931: HP15_931 - lipoprotein, at 944,980 to 945,507
_931
HP15_932: HP15_932 - efflux transporter, RND family, MFP subunit, at 945,621 to 946,790
_932
Position (kb) 943
944
945 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 942.946 kb on - strand at 943.043 kb on + strand at 943.094 kb on + strand, within HP15_929 at 943.094 kb on + strand, within HP15_929 at 943.094 kb on + strand, within HP15_929 at 943.094 kb on + strand, within HP15_929 at 943.102 kb on - strand, within HP15_929 at 943.183 kb on - strand, within HP15_929 at 943.253 kb on + strand, within HP15_929 at 943.309 kb on - strand, within HP15_929 at 943.309 kb on - strand, within HP15_929 at 943.351 kb on - strand, within HP15_929 at 943.389 kb on + strand, within HP15_929 at 943.401 kb on - strand, within HP15_929 at 943.406 kb on - strand, within HP15_929 at 943.414 kb on + strand, within HP15_929 at 943.414 kb on + strand, within HP15_929 at 943.414 kb on + strand, within HP15_929 at 943.422 kb on - strand, within HP15_929 at 943.430 kb on + strand, within HP15_929 at 943.463 kb on + strand, within HP15_929 at 943.470 kb on - strand, within HP15_929 at 943.674 kb on - strand, within HP15_929 at 943.713 kb on - strand, within HP15_929 at 943.744 kb on - strand, within HP15_929 at 943.772 kb on + strand, within HP15_929 at 943.806 kb on + strand at 943.938 kb on + strand at 944.156 kb on - strand, within HP15_930 at 944.169 kb on + strand, within HP15_930 at 944.193 kb on - strand, within HP15_930 at 944.193 kb on - strand, within HP15_930 at 944.235 kb on + strand, within HP15_930 at 944.243 kb on - strand, within HP15_930 at 944.297 kb on + strand, within HP15_930 at 944.550 kb on - strand, within HP15_930 at 944.772 kb on + strand, within HP15_930 at 944.827 kb on - strand at 944.866 kb on + strand at 944.932 kb on + strand at 944.932 kb on + strand at 944.978 kb on + strand at 945.189 kb on - strand, within HP15_931 at 945.578 kb on + strand at 945.672 kb on - strand at 945.688 kb on + strand at 945.696 kb on - strand at 945.893 kb on - strand, within HP15_932
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 942,946 - -0.9 943,043 + +0.1 943,094 + HP15_929 0.15 -0.0 943,094 + HP15_929 0.15 +1.1 943,094 + HP15_929 0.15 -1.8 943,094 + HP15_929 0.15 +1.1 943,102 - HP15_929 0.16 -1.8 943,183 - HP15_929 0.24 -0.7 943,253 + HP15_929 0.32 -1.3 943,309 - HP15_929 0.38 -0.7 943,309 - HP15_929 0.38 +1.4 943,351 - HP15_929 0.42 +2.8 943,389 + HP15_929 0.46 -1.7 943,401 - HP15_929 0.47 -3.0 943,406 - HP15_929 0.48 -2.3 943,414 + HP15_929 0.49 -1.2 943,414 + HP15_929 0.49 -3.0 943,414 + HP15_929 0.49 -2.0 943,422 - HP15_929 0.49 -2.2 943,430 + HP15_929 0.50 +0.6 943,463 + HP15_929 0.54 +0.9 943,470 - HP15_929 0.55 +0.0 943,674 - HP15_929 0.76 +1.5 943,713 - HP15_929 0.80 +1.5 943,744 - HP15_929 0.83 +1.7 943,772 + HP15_929 0.86 +1.5 943,806 + +0.3 943,938 + -0.8 944,156 - HP15_930 0.25 +1.6 944,169 + HP15_930 0.27 +0.4 944,193 - HP15_930 0.29 -2.1 944,193 - HP15_930 0.29 +3.3 944,235 + HP15_930 0.33 -1.4 944,243 - HP15_930 0.34 +1.5 944,297 + HP15_930 0.40 -1.0 944,550 - HP15_930 0.65 +1.4 944,772 + HP15_930 0.87 +0.8 944,827 - -3.7 944,866 + +0.9 944,932 + +0.7 944,932 + -3.0 944,978 + +0.1 945,189 - HP15_931 0.40 -0.8 945,578 + -0.3 945,672 - +1.5 945,688 + +1.5 945,696 - -2.8 945,893 - HP15_932 0.23 -1.1
Or see this region's nucleotide sequence