Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_924 and HP15_925 are separated by 129 nucleotides HP15_925 and HP15_926 are separated by 78 nucleotides HP15_926 and HP15_927 overlap by 4 nucleotides HP15_927 and HP15_928 are separated by 78 nucleotides
HP15_924: HP15_924 - thioesterase family protein, at 938,799 to 939,215
_924
HP15_925: HP15_925 - alpha/beta hydrolase fold protein, at 939,345 to 940,022
_925
HP15_926: HP15_926 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,101 to 940,904
_926
HP15_927: HP15_927 - branched-chain amino acid ABC transporter, ATP-binding protein, at 940,901 to 941,623
_927
HP15_928: HP15_928 - extracellular ligand-binding receptor, at 941,702 to 942,907
_928
Position (kb) 940
941 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 939.123 kb on - strand, within HP15_924 at 939.138 kb on + strand, within HP15_924 at 939.149 kb on + strand, within HP15_924 at 939.157 kb on + strand, within HP15_924 at 939.265 kb on - strand at 939.335 kb on - strand at 939.408 kb on + strand at 939.416 kb on - strand, within HP15_925 at 939.423 kb on - strand, within HP15_925 at 939.453 kb on + strand, within HP15_925 at 939.579 kb on + strand, within HP15_925 at 939.620 kb on + strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.628 kb on - strand, within HP15_925 at 939.641 kb on - strand, within HP15_925 at 939.641 kb on - strand, within HP15_925 at 939.707 kb on + strand, within HP15_925 at 939.807 kb on - strand, within HP15_925 at 939.869 kb on + strand, within HP15_925 at 939.895 kb on + strand, within HP15_925 at 939.895 kb on + strand, within HP15_925 at 940.102 kb on + strand at 940.134 kb on - strand at 940.286 kb on + strand, within HP15_926 at 940.299 kb on + strand, within HP15_926 at 940.307 kb on - strand, within HP15_926 at 940.423 kb on - strand, within HP15_926 at 940.474 kb on + strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.482 kb on - strand, within HP15_926 at 940.642 kb on + strand, within HP15_926 at 940.686 kb on + strand, within HP15_926 at 940.692 kb on + strand, within HP15_926 at 940.709 kb on - strand, within HP15_926 at 940.753 kb on + strand, within HP15_926 at 940.771 kb on - strand, within HP15_926 at 940.772 kb on - strand, within HP15_926 at 940.986 kb on + strand, within HP15_927 at 940.997 kb on + strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.005 kb on - strand, within HP15_927 at 941.020 kb on - strand, within HP15_927 at 941.053 kb on - strand, within HP15_927 at 941.097 kb on + strand, within HP15_927 at 941.256 kb on + strand, within HP15_927 at 941.288 kb on - strand, within HP15_927 at 941.313 kb on + strand, within HP15_927 at 941.413 kb on + strand, within HP15_927 at 941.441 kb on - strand, within HP15_927 at 941.479 kb on + strand, within HP15_927 at 941.505 kb on + strand, within HP15_927 at 941.537 kb on + strand, within HP15_927 at 941.545 kb on - strand, within HP15_927 at 941.583 kb on + strand at 941.583 kb on + strand at 941.659 kb on + strand at 941.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 939,123 - HP15_924 0.78 +0.8 939,138 + HP15_924 0.81 +0.2 939,149 + HP15_924 0.84 +1.1 939,157 + HP15_924 0.86 +0.1 939,265 - -0.5 939,335 - +0.2 939,408 + -0.8 939,416 - HP15_925 0.10 -0.0 939,423 - HP15_925 0.12 -0.5 939,453 + HP15_925 0.16 +1.0 939,579 + HP15_925 0.35 -1.3 939,620 + HP15_925 0.41 -0.1 939,628 - HP15_925 0.42 -3.6 939,628 - HP15_925 0.42 +1.5 939,628 - HP15_925 0.42 +0.2 939,641 - HP15_925 0.44 +0.5 939,641 - HP15_925 0.44 -0.7 939,707 + HP15_925 0.53 -1.2 939,807 - HP15_925 0.68 -2.3 939,869 + HP15_925 0.77 -1.5 939,895 + HP15_925 0.81 -0.5 939,895 + HP15_925 0.81 -1.6 940,102 + -0.2 940,134 - -0.4 940,286 + HP15_926 0.23 -0.3 940,299 + HP15_926 0.25 -2.4 940,307 - HP15_926 0.26 -2.2 940,423 - HP15_926 0.40 -0.9 940,474 + HP15_926 0.46 +1.2 940,482 - HP15_926 0.47 -3.1 940,482 - HP15_926 0.47 -0.7 940,642 + HP15_926 0.67 -0.1 940,686 + HP15_926 0.73 -2.2 940,692 + HP15_926 0.74 -3.3 940,709 - HP15_926 0.76 +0.0 940,753 + HP15_926 0.81 +0.1 940,771 - HP15_926 0.83 -0.5 940,772 - HP15_926 0.83 -0.8 940,986 + HP15_927 0.12 -3.4 940,997 + HP15_927 0.13 +0.8 941,005 - HP15_927 0.14 -1.3 941,005 - HP15_927 0.14 -1.8 941,020 - HP15_927 0.16 +1.7 941,053 - HP15_927 0.21 +1.8 941,097 + HP15_927 0.27 +1.5 941,256 + HP15_927 0.49 +0.5 941,288 - HP15_927 0.54 +0.5 941,313 + HP15_927 0.57 -0.5 941,413 + HP15_927 0.71 -1.5 941,441 - HP15_927 0.75 -0.8 941,479 + HP15_927 0.80 -0.1 941,505 + HP15_927 0.84 -2.3 941,537 + HP15_927 0.88 -0.8 941,545 - HP15_927 0.89 -0.8 941,583 + +1.1 941,583 + +1.4 941,659 + +0.5 941,809 + -2.2
Or see this region's nucleotide sequence