Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09560 and PGA1_c09570 are separated by 3 nucleotides PGA1_c09570 and PGA1_c09580 are separated by 4 nucleotides PGA1_c09580 and PGA1_c09590 are separated by 79 nucleotides
PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427
_c09560
PGA1_c09570: PGA1_c09570 - putative HTH-type transcriptional regulator, MarR family, at 982,431 to 982,874
_c09570
PGA1_c09580: PGA1_c09580 - antibiotic biosynthesis monooxygenase-like protein, at 982,879 to 983,172
_c09580
PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433
_c09590
Position (kb) 982
983
984 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 982.421 kb on + strand at 982.423 kb on + strand at 982.423 kb on + strand at 982.531 kb on - strand, within PGA1_c09570 at 982.564 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.594 kb on - strand, within PGA1_c09570 at 982.598 kb on - strand, within PGA1_c09570 at 982.608 kb on - strand, within PGA1_c09570 at 982.726 kb on - strand, within PGA1_c09570 at 982.727 kb on - strand, within PGA1_c09570 at 982.820 kb on + strand, within PGA1_c09570 at 982.828 kb on - strand, within PGA1_c09570 at 982.830 kb on + strand at 982.830 kb on + strand at 982.849 kb on - strand at 982.882 kb on + strand at 982.885 kb on - strand at 982.885 kb on - strand at 982.890 kb on - strand at 982.913 kb on + strand, within PGA1_c09580 at 982.913 kb on + strand, within PGA1_c09580 at 982.921 kb on - strand, within PGA1_c09580 at 983.013 kb on + strand, within PGA1_c09580 at 983.085 kb on - strand, within PGA1_c09580 at 983.132 kb on - strand, within PGA1_c09580 at 983.138 kb on - strand, within PGA1_c09580 at 983.250 kb on + strand at 983.250 kb on + strand at 983.258 kb on - strand at 983.284 kb on - strand at 983.297 kb on - strand at 983.297 kb on - strand at 983.330 kb on + strand at 983.442 kb on - strand, within PGA1_c09590 at 983.444 kb on + strand, within PGA1_c09590 at 983.519 kb on + strand, within PGA1_c09590 at 983.538 kb on + strand, within PGA1_c09590 at 983.539 kb on + strand, within PGA1_c09590 at 983.672 kb on + strand, within PGA1_c09590 at 983.687 kb on + strand, within PGA1_c09590 at 983.695 kb on - strand, within PGA1_c09590 at 983.695 kb on - strand, within PGA1_c09590 at 983.741 kb on - strand, within PGA1_c09590 at 983.743 kb on + strand, within PGA1_c09590 at 983.798 kb on - strand, within PGA1_c09590 at 983.798 kb on - strand, within PGA1_c09590 at 983.809 kb on + strand, within PGA1_c09590 at 983.817 kb on - strand, within PGA1_c09590 at 983.817 kb on - strand, within PGA1_c09590 at 983.876 kb on - strand, within PGA1_c09590 at 983.916 kb on - strand, within PGA1_c09590 at 983.936 kb on - strand, within PGA1_c09590 at 983.982 kb on + strand, within PGA1_c09590 at 984.036 kb on - strand, within PGA1_c09590 at 984.050 kb on + strand, within PGA1_c09590 at 984.073 kb on + strand, within PGA1_c09590 at 984.138 kb on + strand, within PGA1_c09590
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 982,421 + +0.4 982,423 + -0.0 982,423 + +0.4 982,531 - PGA1_c09570 0.23 -1.2 982,564 + PGA1_c09570 0.30 -1.2 982,590 + PGA1_c09570 0.36 +1.4 982,590 + PGA1_c09570 0.36 -0.5 982,594 - PGA1_c09570 0.37 -1.2 982,598 - PGA1_c09570 0.38 +0.4 982,608 - PGA1_c09570 0.40 -1.3 982,726 - PGA1_c09570 0.66 +0.6 982,727 - PGA1_c09570 0.67 -3.6 982,820 + PGA1_c09570 0.88 -0.0 982,828 - PGA1_c09570 0.89 +0.4 982,830 + -1.2 982,830 + -3.1 982,849 - -0.3 982,882 + +1.0 982,885 - +0.0 982,885 - -2.3 982,890 - +0.3 982,913 + PGA1_c09580 0.12 +1.5 982,913 + PGA1_c09580 0.12 -2.1 982,921 - PGA1_c09580 0.14 -1.3 983,013 + PGA1_c09580 0.46 +0.9 983,085 - PGA1_c09580 0.70 +1.8 983,132 - PGA1_c09580 0.86 +0.4 983,138 - PGA1_c09580 0.88 -0.1 983,250 + +0.6 983,250 + -0.6 983,258 - +0.4 983,284 - -2.3 983,297 - +1.4 983,297 - -2.1 983,330 + -0.3 983,442 - PGA1_c09590 0.16 +0.9 983,444 + PGA1_c09590 0.16 -0.1 983,519 + PGA1_c09590 0.23 +0.8 983,538 + PGA1_c09590 0.24 -0.2 983,539 + PGA1_c09590 0.24 -0.3 983,672 + PGA1_c09590 0.36 +0.5 983,687 + PGA1_c09590 0.37 +1.6 983,695 - PGA1_c09590 0.37 +1.0 983,695 - PGA1_c09590 0.37 -0.5 983,741 - PGA1_c09590 0.41 +1.2 983,743 + PGA1_c09590 0.42 -0.0 983,798 - PGA1_c09590 0.46 +1.0 983,798 - PGA1_c09590 0.46 +0.5 983,809 + PGA1_c09590 0.47 -1.3 983,817 - PGA1_c09590 0.48 +0.8 983,817 - PGA1_c09590 0.48 +0.9 983,876 - PGA1_c09590 0.53 -0.2 983,916 - PGA1_c09590 0.56 +0.1 983,936 - PGA1_c09590 0.58 +0.2 983,982 + PGA1_c09590 0.62 +1.3 984,036 - PGA1_c09590 0.66 +0.7 984,050 + PGA1_c09590 0.68 +1.1 984,073 + PGA1_c09590 0.69 -2.0 984,138 + PGA1_c09590 0.75 +0.7
Or see this region's nucleotide sequence