Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_907 and HP15_908 are separated by 62 nucleotides HP15_908 and HP15_909 are separated by 33 nucleotides
HP15_907: HP15_907 - acyl-CoA dehydrogenase domain protein, at 919,118 to 920,284
_907
HP15_908: HP15_908 - enoyl-CoA hydratase/isomerase, at 920,347 to 921,126
_908
HP15_909: HP15_909 - enoyl-CoA hydratase/isomerase family protein, at 921,160 to 922,230
_909
Position (kb) 920
921
922 Strain fitness (log2 ratio) -2
-1
0
1
2 at 919.357 kb on - strand, within HP15_907 at 919.365 kb on - strand, within HP15_907 at 919.365 kb on - strand, within HP15_907 at 919.382 kb on + strand, within HP15_907 at 919.894 kb on - strand, within HP15_907 at 919.894 kb on - strand, within HP15_907 at 920.057 kb on + strand, within HP15_907 at 920.060 kb on - strand, within HP15_907 at 920.070 kb on - strand, within HP15_907 at 920.146 kb on - strand, within HP15_907 at 920.609 kb on + strand, within HP15_908 at 920.763 kb on - strand, within HP15_908 at 921.160 kb on - strand at 921.297 kb on + strand, within HP15_909 at 921.385 kb on - strand, within HP15_909 at 921.390 kb on - strand, within HP15_909 at 921.511 kb on + strand, within HP15_909 at 921.616 kb on - strand, within HP15_909 at 921.688 kb on - strand, within HP15_909 at 921.761 kb on + strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.818 kb on - strand, within HP15_909 at 921.925 kb on - strand, within HP15_909 at 921.925 kb on - strand, within HP15_909 at 921.949 kb on - strand, within HP15_909
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 919,357 - HP15_907 0.20 -1.2 919,365 - HP15_907 0.21 +0.5 919,365 - HP15_907 0.21 +1.5 919,382 + HP15_907 0.23 -2.0 919,894 - HP15_907 0.66 -2.1 919,894 - HP15_907 0.66 +0.9 920,057 + HP15_907 0.80 -2.1 920,060 - HP15_907 0.81 -2.3 920,070 - HP15_907 0.82 -0.1 920,146 - HP15_907 0.88 +0.1 920,609 + HP15_908 0.34 -2.7 920,763 - HP15_908 0.53 -2.2 921,160 - -2.0 921,297 + HP15_909 0.13 -1.5 921,385 - HP15_909 0.21 -0.6 921,390 - HP15_909 0.21 -1.5 921,511 + HP15_909 0.33 -1.1 921,616 - HP15_909 0.43 -1.1 921,688 - HP15_909 0.49 +1.5 921,761 + HP15_909 0.56 -0.5 921,818 - HP15_909 0.61 -0.6 921,818 - HP15_909 0.61 +2.0 921,818 - HP15_909 0.61 +2.3 921,925 - HP15_909 0.71 +1.0 921,925 - HP15_909 0.71 -0.0 921,949 - HP15_909 0.74 +2.7
Or see this region's nucleotide sequence