Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_906 and HP15_907 are separated by 93 nucleotides HP15_907 and HP15_908 are separated by 62 nucleotides HP15_908 and HP15_909 are separated by 33 nucleotides
HP15_906: HP15_906 - methylmalonate-semialdehyde dehydrogenase, at 917,531 to 919,024
_906
HP15_907: HP15_907 - acyl-CoA dehydrogenase domain protein, at 919,118 to 920,284
_907
HP15_908: HP15_908 - enoyl-CoA hydratase/isomerase, at 920,347 to 921,126
_908
HP15_909: HP15_909 - enoyl-CoA hydratase/isomerase family protein, at 921,160 to 922,230
_909
Position (kb) 919
920
921 Strain fitness (log2 ratio) -2
-1
0
1
2 at 918.120 kb on - strand, within HP15_906 at 918.273 kb on - strand, within HP15_906 at 918.362 kb on + strand, within HP15_906 at 918.407 kb on + strand, within HP15_906 at 918.499 kb on - strand, within HP15_906 at 918.543 kb on + strand, within HP15_906 at 918.587 kb on + strand, within HP15_906 at 918.626 kb on + strand, within HP15_906 at 918.821 kb on + strand, within HP15_906 at 918.892 kb on + strand at 918.900 kb on - strand at 918.900 kb on - strand at 918.954 kb on + strand at 918.975 kb on + strand at 919.122 kb on + strand at 919.271 kb on + strand, within HP15_907 at 919.357 kb on - strand, within HP15_907 at 919.365 kb on - strand, within HP15_907 at 919.365 kb on - strand, within HP15_907 at 919.382 kb on + strand, within HP15_907 at 919.894 kb on - strand, within HP15_907 at 919.894 kb on - strand, within HP15_907 at 920.057 kb on + strand, within HP15_907 at 920.060 kb on - strand, within HP15_907 at 920.070 kb on - strand, within HP15_907 at 920.146 kb on - strand, within HP15_907 at 920.609 kb on + strand, within HP15_908 at 920.763 kb on - strand, within HP15_908 at 921.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 918,120 - HP15_906 0.39 -0.5 918,273 - HP15_906 0.50 -1.0 918,362 + HP15_906 0.56 +0.0 918,407 + HP15_906 0.59 +0.7 918,499 - HP15_906 0.65 +2.3 918,543 + HP15_906 0.68 -0.2 918,587 + HP15_906 0.71 +0.2 918,626 + HP15_906 0.73 -0.4 918,821 + HP15_906 0.86 -0.5 918,892 + +0.1 918,900 - -0.3 918,900 - -1.2 918,954 + -1.5 918,975 + +0.3 919,122 + +0.2 919,271 + HP15_907 0.13 +1.9 919,357 - HP15_907 0.20 -1.2 919,365 - HP15_907 0.21 +0.5 919,365 - HP15_907 0.21 +1.5 919,382 + HP15_907 0.23 -2.0 919,894 - HP15_907 0.66 -2.1 919,894 - HP15_907 0.66 +0.9 920,057 + HP15_907 0.80 -2.1 920,060 - HP15_907 0.81 -2.3 920,070 - HP15_907 0.82 -0.1 920,146 - HP15_907 0.88 +0.1 920,609 + HP15_908 0.34 -2.7 920,763 - HP15_908 0.53 -2.2 921,160 - -2.0
Or see this region's nucleotide sequence