Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_878 and HP15_879 are separated by 84 nucleotides HP15_879 and HP15_880 are separated by 57 nucleotides HP15_880 and HP15_881 are separated by 4 nucleotides HP15_881 and HP15_882 are separated by 72 nucleotides
HP15_878: HP15_878 - conserved hypothetical protein, at 895,598 to 895,924
_878
HP15_879: HP15_879 - short-chain dehydrogenase/reductase SDR, at 896,009 to 896,683
_879
HP15_880: HP15_880 - oxidoreductase, short chain dehydrogenase/reductase family, at 896,741 to 897,472
_880
HP15_881: HP15_881 - 2',5' RNA ligase, at 897,477 to 898,019
_881
HP15_882: HP15_882 - hydrolase, carbon-nitrogen family protein, at 898,092 to 899,660
_882
Position (kb) 896
897
898 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 895.741 kb on - strand, within HP15_878 at 895.743 kb on - strand, within HP15_878 at 895.763 kb on + strand, within HP15_878 at 895.851 kb on + strand, within HP15_878 at 895.859 kb on - strand, within HP15_878 at 895.939 kb on - strand at 895.939 kb on - strand at 896.167 kb on - strand, within HP15_879 at 896.294 kb on - strand, within HP15_879 at 896.334 kb on + strand, within HP15_879 at 896.342 kb on - strand, within HP15_879 at 896.385 kb on - strand, within HP15_879 at 896.433 kb on + strand, within HP15_879 at 896.443 kb on - strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.514 kb on + strand, within HP15_879 at 896.547 kb on + strand, within HP15_879 at 896.676 kb on - strand at 896.917 kb on + strand, within HP15_880 at 897.091 kb on - strand, within HP15_880 at 897.129 kb on + strand, within HP15_880 at 897.189 kb on - strand, within HP15_880 at 897.278 kb on + strand, within HP15_880 at 897.281 kb on - strand, within HP15_880 at 897.288 kb on + strand, within HP15_880 at 897.296 kb on - strand, within HP15_880 at 897.326 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.345 kb on + strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.353 kb on - strand, within HP15_880 at 897.448 kb on - strand at 897.566 kb on + strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.579 kb on - strand, within HP15_881 at 897.587 kb on + strand, within HP15_881 at 897.646 kb on - strand, within HP15_881 at 897.747 kb on - strand, within HP15_881 at 897.851 kb on - strand, within HP15_881 at 897.918 kb on - strand, within HP15_881 at 897.955 kb on + strand, within HP15_881 at 897.963 kb on - strand, within HP15_881 at 898.144 kb on + strand at 898.238 kb on + strand at 898.246 kb on - strand at 898.246 kb on - strand at 898.411 kb on + strand, within HP15_882
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 895,741 - HP15_878 0.44 +0.1 895,743 - HP15_878 0.44 +0.5 895,763 + HP15_878 0.50 -1.2 895,851 + HP15_878 0.77 -0.4 895,859 - HP15_878 0.80 +0.0 895,939 - +0.3 895,939 - +1.6 896,167 - HP15_879 0.23 -2.0 896,294 - HP15_879 0.42 -0.3 896,334 + HP15_879 0.48 +1.7 896,342 - HP15_879 0.49 +1.1 896,385 - HP15_879 0.56 -1.5 896,433 + HP15_879 0.63 -1.1 896,443 - HP15_879 0.64 +0.7 896,514 + HP15_879 0.75 -1.3 896,514 + HP15_879 0.75 +0.5 896,514 + HP15_879 0.75 -0.7 896,547 + HP15_879 0.80 -0.4 896,676 - +0.5 896,917 + HP15_880 0.24 +1.0 897,091 - HP15_880 0.48 +0.4 897,129 + HP15_880 0.53 -0.5 897,189 - HP15_880 0.61 -2.5 897,278 + HP15_880 0.73 +0.2 897,281 - HP15_880 0.74 +2.6 897,288 + HP15_880 0.75 +0.5 897,296 - HP15_880 0.76 +0.5 897,326 + HP15_880 0.80 -3.0 897,345 + HP15_880 0.83 +0.2 897,345 + HP15_880 0.83 +0.4 897,353 - HP15_880 0.84 +1.9 897,353 - HP15_880 0.84 -0.2 897,353 - HP15_880 0.84 +0.5 897,353 - HP15_880 0.84 -3.3 897,448 - +0.8 897,566 + HP15_881 0.16 -0.5 897,579 - HP15_881 0.19 -0.1 897,579 - HP15_881 0.19 +0.5 897,587 + HP15_881 0.20 -0.2 897,646 - HP15_881 0.31 -1.4 897,747 - HP15_881 0.50 +0.6 897,851 - HP15_881 0.69 -1.4 897,918 - HP15_881 0.81 -2.1 897,955 + HP15_881 0.88 +3.5 897,963 - HP15_881 0.90 -2.3 898,144 + +0.0 898,238 + +0.3 898,246 - -1.3 898,246 - +0.3 898,411 + HP15_882 0.20 -1.3
Or see this region's nucleotide sequence