Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0886 and Psest_0888 are separated by 502 nucleotides Psest_0888 and Psest_0889 are separated by 185 nucleotides Psest_0889 and Psest_0890 are separated by 43 nucleotides
Psest_0886: Psest_0886 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 963,442 to 964,455
_0886
Psest_0888: Psest_0888 - Uncharacterized membrane-anchored protein conserved in bacteria, at 964,958 to 966,293
_0888
Psest_0889: Psest_0889 - Lactoylglutathione lyase and related lyases, at 966,479 to 966,877
_0889
Psest_0890: Psest_0890 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 966,921 to 968,030
_0890
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 964.065 kb on - strand, within Psest_0886 at 964.067 kb on + strand, within Psest_0886 at 964.067 kb on + strand, within Psest_0886 at 964.067 kb on + strand, within Psest_0886 at 964.067 kb on + strand, within Psest_0886 at 964.068 kb on - strand, within Psest_0886 at 964.075 kb on + strand, within Psest_0886 at 964.076 kb on - strand, within Psest_0886 at 964.289 kb on - strand, within Psest_0886 at 964.289 kb on - strand, within Psest_0886 at 964.472 kb on + strand at 964.472 kb on + strand at 964.472 kb on + strand at 964.472 kb on + strand at 964.472 kb on + strand at 964.472 kb on + strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.473 kb on - strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.476 kb on + strand at 964.477 kb on - strand at 964.477 kb on - strand at 964.477 kb on - strand at 964.538 kb on + strand at 964.539 kb on - strand at 964.551 kb on + strand at 964.552 kb on - strand at 964.552 kb on - strand at 964.606 kb on + strand at 964.729 kb on + strand at 964.729 kb on + strand at 964.729 kb on + strand at 964.729 kb on + strand at 964.729 kb on + strand at 964.729 kb on + strand at 964.729 kb on + strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.730 kb on - strand at 964.745 kb on + strand at 964.745 kb on + strand at 964.745 kb on + strand at 964.771 kb on + strand at 964.772 kb on - strand at 964.830 kb on + strand at 964.837 kb on + strand at 964.837 kb on + strand at 964.838 kb on - strand at 964.838 kb on - strand at 965.045 kb on + strand at 965.046 kb on - strand at 965.127 kb on + strand, within Psest_0888 at 965.128 kb on - strand, within Psest_0888 at 965.128 kb on - strand, within Psest_0888 at 965.431 kb on - strand, within Psest_0888 at 965.431 kb on - strand, within Psest_0888 at 965.431 kb on - strand, within Psest_0888 at 965.431 kb on - strand, within Psest_0888 at 965.431 kb on - strand, within Psest_0888 at 965.434 kb on - strand, within Psest_0888 at 965.434 kb on - strand, within Psest_0888 at 965.434 kb on - strand, within Psest_0888 at 965.434 kb on - strand, within Psest_0888 at 965.434 kb on - strand, within Psest_0888 at 965.434 kb on - strand, within Psest_0888 at 965.540 kb on + strand, within Psest_0888 at 965.551 kb on + strand, within Psest_0888 at 965.551 kb on + strand, within Psest_0888 at 965.552 kb on - strand, within Psest_0888 at 965.552 kb on - strand, within Psest_0888 at 965.647 kb on + strand, within Psest_0888 at 965.647 kb on + strand, within Psest_0888 at 965.647 kb on + strand, within Psest_0888 at 965.648 kb on - strand, within Psest_0888 at 965.648 kb on - strand, within Psest_0888 at 965.648 kb on - strand, within Psest_0888 at 965.648 kb on - strand, within Psest_0888 at 965.652 kb on + strand, within Psest_0888 at 965.653 kb on - strand, within Psest_0888 at 965.653 kb on - strand, within Psest_0888 at 965.653 kb on - strand, within Psest_0888 at 965.669 kb on + strand, within Psest_0888 at 965.789 kb on + strand, within Psest_0888 at 965.789 kb on + strand, within Psest_0888 at 965.910 kb on + strand, within Psest_0888 at 965.910 kb on + strand, within Psest_0888 at 965.911 kb on - strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.974 kb on + strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.975 kb on - strand, within Psest_0888 at 965.978 kb on + strand, within Psest_0888 at 965.978 kb on + strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 965.979 kb on - strand, within Psest_0888 at 966.081 kb on + strand, within Psest_0888 at 966.081 kb on + strand, within Psest_0888 at 966.081 kb on + strand, within Psest_0888 at 966.081 kb on + strand, within Psest_0888 at 966.082 kb on - strand, within Psest_0888 at 966.082 kb on - strand, within Psest_0888 at 966.144 kb on + strand, within Psest_0888 at 966.144 kb on + strand, within Psest_0888 at 966.144 kb on + strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.145 kb on - strand, within Psest_0888 at 966.146 kb on + strand, within Psest_0888 at 966.270 kb on - strand at 966.270 kb on - strand at 966.414 kb on - strand at 966.428 kb on - strand at 966.430 kb on - strand at 966.430 kb on - strand at 966.430 kb on - strand at 966.430 kb on - strand at 966.430 kb on - strand at 966.430 kb on - strand at 966.432 kb on + strand at 966.433 kb on - strand at 966.433 kb on - strand at 966.433 kb on - strand at 966.433 kb on - strand at 966.492 kb on + strand at 966.492 kb on + strand at 966.493 kb on - strand at 966.528 kb on + strand, within Psest_0889 at 966.529 kb on - strand, within Psest_0889 at 966.529 kb on - strand, within Psest_0889 at 966.529 kb on - strand, within Psest_0889 at 966.529 kb on - strand, within Psest_0889 at 966.537 kb on + strand, within Psest_0889 at 966.537 kb on + strand, within Psest_0889 at 966.537 kb on + strand, within Psest_0889 at 966.537 kb on + strand, within Psest_0889 at 966.537 kb on + strand, within Psest_0889 at 966.537 kb on + strand, within Psest_0889 at 966.538 kb on - strand, within Psest_0889 at 966.538 kb on - strand, within Psest_0889 at 966.731 kb on + strand, within Psest_0889 at 966.792 kb on + strand, within Psest_0889 at 966.792 kb on + strand, within Psest_0889 at 966.793 kb on - strand, within Psest_0889 at 966.793 kb on - strand, within Psest_0889 at 966.881 kb on + strand at 966.881 kb on + strand at 966.882 kb on - strand at 966.882 kb on - strand at 966.882 kb on - strand at 966.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 964,065 - Psest_0886 0.61 -0.7 964,067 + Psest_0886 0.62 +0.6 964,067 + Psest_0886 0.62 +0.6 964,067 + Psest_0886 0.62 -1.1 964,067 + Psest_0886 0.62 -0.9 964,068 - Psest_0886 0.62 -0.7 964,075 + Psest_0886 0.62 -0.1 964,076 - Psest_0886 0.63 -0.5 964,289 - Psest_0886 0.84 -0.4 964,289 - Psest_0886 0.84 -1.0 964,472 + +1.0 964,472 + +1.6 964,472 + -1.1 964,472 + -0.7 964,472 + +1.6 964,472 + -0.9 964,473 - +0.2 964,473 - -0.3 964,473 - +0.4 964,473 - +1.3 964,473 - +1.5 964,473 - -1.3 964,473 - -0.3 964,473 - -0.3 964,473 - -0.8 964,473 - -0.4 964,476 + +1.2 964,476 + -0.3 964,476 + +0.0 964,476 + -0.3 964,476 + +0.3 964,476 + +0.8 964,476 + +0.1 964,476 + -0.4 964,477 - -0.7 964,477 - +0.1 964,477 - +0.4 964,538 + +1.4 964,539 - -0.1 964,551 + +0.1 964,552 - +0.8 964,552 - -1.8 964,606 + +0.6 964,729 + -2.1 964,729 + -0.3 964,729 + -0.2 964,729 + +0.1 964,729 + -0.4 964,729 + -0.6 964,729 + +0.8 964,730 - +0.0 964,730 - +1.5 964,730 - +0.8 964,730 - +1.0 964,730 - +0.8 964,730 - +2.1 964,730 - +2.2 964,730 - +0.6 964,745 + -0.2 964,745 + -0.3 964,745 + +0.2 964,771 + -0.6 964,772 - +0.3 964,830 + -0.9 964,837 + -2.0 964,837 + +0.3 964,838 - -1.5 964,838 - -1.0 965,045 + -0.2 965,046 - -0.1 965,127 + Psest_0888 0.13 +0.5 965,128 - Psest_0888 0.13 +0.8 965,128 - Psest_0888 0.13 -0.8 965,431 - Psest_0888 0.35 -0.5 965,431 - Psest_0888 0.35 +0.8 965,431 - Psest_0888 0.35 -0.2 965,431 - Psest_0888 0.35 -0.5 965,431 - Psest_0888 0.35 +0.2 965,434 - Psest_0888 0.36 +1.0 965,434 - Psest_0888 0.36 +0.4 965,434 - Psest_0888 0.36 +0.7 965,434 - Psest_0888 0.36 +2.2 965,434 - Psest_0888 0.36 -0.7 965,434 - Psest_0888 0.36 +0.4 965,540 + Psest_0888 0.44 +1.0 965,551 + Psest_0888 0.44 +1.9 965,551 + Psest_0888 0.44 +1.4 965,552 - Psest_0888 0.44 +0.9 965,552 - Psest_0888 0.44 +0.0 965,647 + Psest_0888 0.52 +0.6 965,647 + Psest_0888 0.52 +0.6 965,647 + Psest_0888 0.52 +3.7 965,648 - Psest_0888 0.52 +0.6 965,648 - Psest_0888 0.52 -0.2 965,648 - Psest_0888 0.52 -1.6 965,648 - Psest_0888 0.52 +1.5 965,652 + Psest_0888 0.52 -1.3 965,653 - Psest_0888 0.52 +0.6 965,653 - Psest_0888 0.52 -0.8 965,653 - Psest_0888 0.52 +1.2 965,669 + Psest_0888 0.53 +1.8 965,789 + Psest_0888 0.62 -0.4 965,789 + Psest_0888 0.62 +1.1 965,910 + Psest_0888 0.71 -0.4 965,910 + Psest_0888 0.71 -1.4 965,911 - Psest_0888 0.71 +1.9 965,974 + Psest_0888 0.76 -0.3 965,974 + Psest_0888 0.76 -0.6 965,974 + Psest_0888 0.76 +0.5 965,974 + Psest_0888 0.76 +0.6 965,974 + Psest_0888 0.76 -0.3 965,974 + Psest_0888 0.76 -1.4 965,974 + Psest_0888 0.76 -1.1 965,974 + Psest_0888 0.76 -0.1 965,974 + Psest_0888 0.76 +0.1 965,975 - Psest_0888 0.76 +0.8 965,975 - Psest_0888 0.76 -0.7 965,975 - Psest_0888 0.76 +0.1 965,975 - Psest_0888 0.76 -0.8 965,975 - Psest_0888 0.76 -0.7 965,975 - Psest_0888 0.76 +0.6 965,975 - Psest_0888 0.76 -1.4 965,975 - Psest_0888 0.76 +0.2 965,975 - Psest_0888 0.76 -0.3 965,975 - Psest_0888 0.76 +0.9 965,975 - Psest_0888 0.76 +1.0 965,975 - Psest_0888 0.76 +1.7 965,975 - Psest_0888 0.76 -0.8 965,978 + Psest_0888 0.76 -0.2 965,978 + Psest_0888 0.76 -1.9 965,979 - Psest_0888 0.76 +0.6 965,979 - Psest_0888 0.76 -0.5 965,979 - Psest_0888 0.76 +0.1 965,979 - Psest_0888 0.76 +0.0 965,979 - Psest_0888 0.76 +0.6 965,979 - Psest_0888 0.76 -0.1 965,979 - Psest_0888 0.76 -0.2 965,979 - Psest_0888 0.76 -0.1 965,979 - Psest_0888 0.76 -0.2 966,081 + Psest_0888 0.84 -0.5 966,081 + Psest_0888 0.84 -0.8 966,081 + Psest_0888 0.84 +0.2 966,081 + Psest_0888 0.84 +0.0 966,082 - Psest_0888 0.84 +1.2 966,082 - Psest_0888 0.84 +0.2 966,144 + Psest_0888 0.89 +0.6 966,144 + Psest_0888 0.89 +0.0 966,144 + Psest_0888 0.89 +0.4 966,145 - Psest_0888 0.89 +0.9 966,145 - Psest_0888 0.89 +0.2 966,145 - Psest_0888 0.89 -0.6 966,145 - Psest_0888 0.89 -2.4 966,145 - Psest_0888 0.89 -0.7 966,145 - Psest_0888 0.89 -0.9 966,145 - Psest_0888 0.89 -1.9 966,146 + Psest_0888 0.89 +0.8 966,270 - -1.4 966,270 - -1.6 966,414 - +1.8 966,428 - +1.0 966,430 - +1.6 966,430 - +1.9 966,430 - +2.4 966,430 - +1.7 966,430 - +0.6 966,430 - +1.9 966,432 + -1.2 966,433 - +0.9 966,433 - +2.4 966,433 - +1.0 966,433 - +1.4 966,492 + -0.8 966,492 + -0.9 966,493 - +1.0 966,528 + Psest_0889 0.12 -1.4 966,529 - Psest_0889 0.13 +0.6 966,529 - Psest_0889 0.13 +1.7 966,529 - Psest_0889 0.13 +2.1 966,529 - Psest_0889 0.13 +1.2 966,537 + Psest_0889 0.15 +0.1 966,537 + Psest_0889 0.15 +0.9 966,537 + Psest_0889 0.15 -1.1 966,537 + Psest_0889 0.15 +0.5 966,537 + Psest_0889 0.15 +0.0 966,537 + Psest_0889 0.15 -1.0 966,538 - Psest_0889 0.15 +2.1 966,538 - Psest_0889 0.15 +0.8 966,731 + Psest_0889 0.63 -0.1 966,792 + Psest_0889 0.78 -0.1 966,792 + Psest_0889 0.78 -2.2 966,793 - Psest_0889 0.79 +0.3 966,793 - Psest_0889 0.79 +0.5 966,881 + +1.3 966,881 + -0.9 966,882 - -1.8 966,882 - +0.0 966,882 - -0.1 966,882 - +0.0
Or see this region's nucleotide sequence