Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_845 and HP15_846 overlap by 4 nucleotides HP15_846 and HP15_847 are separated by 40 nucleotides HP15_847 and HP15_848 are separated by 112 nucleotides
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
HP15_846: HP15_846 - DR1885-like metal-binding protein, at 865,699 to 866,307
_846
HP15_847: HP15_847 - hypothetical protein, at 866,348 to 866,476
_847
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
Position (kb) 866
867 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 865.419 kb on - strand, within HP15_845 at 865.524 kb on + strand at 865.586 kb on + strand at 865.591 kb on + strand at 865.630 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.704 kb on - strand at 865.833 kb on + strand, within HP15_846 at 866.072 kb on - strand, within HP15_846 at 866.164 kb on + strand, within HP15_846 at 866.189 kb on + strand, within HP15_846 at 866.372 kb on + strand, within HP15_847 at 866.380 kb on - strand, within HP15_847 at 866.445 kb on + strand, within HP15_847 at 866.558 kb on - strand at 866.633 kb on - strand at 866.641 kb on + strand at 866.744 kb on + strand, within HP15_848 at 866.820 kb on + strand, within HP15_848 at 866.839 kb on - strand, within HP15_848 at 866.875 kb on - strand, within HP15_848 at 866.901 kb on - strand, within HP15_848 at 866.963 kb on + strand, within HP15_848 at 866.966 kb on - strand, within HP15_848 at 866.987 kb on - strand, within HP15_848 at 867.051 kb on + strand, within HP15_848 at 867.232 kb on - strand, within HP15_848
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 865,419 - HP15_845 0.88 -1.2 865,524 + -1.0 865,586 + -2.3 865,591 + -1.1 865,630 + -1.3 865,655 + -0.8 865,655 + -0.1 865,655 + +0.5 865,704 - -2.7 865,833 + HP15_846 0.22 +1.5 866,072 - HP15_846 0.61 +2.5 866,164 + HP15_846 0.76 -1.3 866,189 + HP15_846 0.80 -1.7 866,372 + HP15_847 0.19 -1.3 866,380 - HP15_847 0.25 -2.1 866,445 + HP15_847 0.75 -0.4 866,558 - -3.8 866,633 - -2.3 866,641 + -1.5 866,744 + HP15_848 0.19 -0.9 866,820 + HP15_848 0.28 -0.1 866,839 - HP15_848 0.30 -1.5 866,875 - HP15_848 0.34 -0.9 866,901 - HP15_848 0.38 -1.5 866,963 + HP15_848 0.45 -1.0 866,966 - HP15_848 0.45 -2.0 866,987 - HP15_848 0.48 -0.2 867,051 + HP15_848 0.56 -0.9 867,232 - HP15_848 0.77 -0.7
Or see this region's nucleotide sequence