Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_840 and HP15_841 are separated by 102 nucleotides HP15_841 and HP15_842 are separated by 284 nucleotides HP15_842 and HP15_843 are separated by 40 nucleotides
HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685
_840
HP15_841: HP15_841 - YaiI/YqxD-like protein, at 860,788 to 861,240
_841
HP15_842: HP15_842 - phosphoglycerate mutase family protein, at 861,525 to 862,097
_842
HP15_843: HP15_843 - PhnA protein, at 862,138 to 862,476
_843
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.850 kb on - strand, within HP15_840 at 859.929 kb on + strand, within HP15_840 at 859.977 kb on + strand, within HP15_840 at 859.990 kb on + strand, within HP15_840 at 860.043 kb on - strand, within HP15_840 at 860.063 kb on + strand, within HP15_840 at 860.081 kb on + strand, within HP15_840 at 860.118 kb on + strand, within HP15_840 at 860.236 kb on + strand, within HP15_840 at 860.247 kb on + strand, within HP15_840 at 860.520 kb on + strand at 860.689 kb on - strand at 860.853 kb on + strand, within HP15_841 at 860.948 kb on + strand, within HP15_841 at 861.019 kb on - strand, within HP15_841 at 861.192 kb on - strand, within HP15_841 at 861.192 kb on - strand, within HP15_841 at 861.199 kb on + strand at 861.276 kb on - strand at 861.361 kb on - strand at 861.614 kb on - strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.636 kb on + strand, within HP15_842 at 861.654 kb on + strand, within HP15_842 at 861.751 kb on - strand, within HP15_842 at 861.778 kb on + strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 861.999 kb on - strand, within HP15_842 at 862.068 kb on + strand at 862.154 kb on - strand at 862.198 kb on + strand, within HP15_843 at 862.203 kb on + strand, within HP15_843
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 859,850 - HP15_840 0.54 -2.0 859,929 + HP15_840 0.58 -0.0 859,977 + HP15_840 0.61 +1.7 859,990 + HP15_840 0.61 -1.1 860,043 - HP15_840 0.64 +2.1 860,063 + HP15_840 0.65 -0.9 860,081 + HP15_840 0.66 +2.0 860,118 + HP15_840 0.68 +0.5 860,236 + HP15_840 0.75 -0.7 860,247 + HP15_840 0.76 -0.6 860,520 + -0.1 860,689 - -3.0 860,853 + HP15_841 0.14 +0.3 860,948 + HP15_841 0.35 -1.9 861,019 - HP15_841 0.51 -1.9 861,192 - HP15_841 0.89 +0.5 861,192 - HP15_841 0.89 +0.3 861,199 + +2.4 861,276 - -1.1 861,361 - -1.6 861,614 - HP15_842 0.16 -1.2 861,636 + HP15_842 0.19 -1.5 861,636 + HP15_842 0.19 -0.5 861,654 + HP15_842 0.23 -2.0 861,751 - HP15_842 0.39 -3.6 861,778 + HP15_842 0.44 +1.2 861,999 - HP15_842 0.83 -1.1 861,999 - HP15_842 0.83 +1.5 862,068 + +0.8 862,154 - +1.2 862,198 + HP15_843 0.18 -0.5 862,203 + HP15_843 0.19 +1.5
Or see this region's nucleotide sequence