Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_837 and HP15_838 are separated by 49 nucleotides HP15_838 and HP15_839 overlap by 11 nucleotides HP15_839 and HP15_840 are separated by 68 nucleotides
HP15_837: HP15_837 - iron-hydroxamate transporter permease subunit, at 855,096 to 857,066
_837
HP15_838: HP15_838 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 857,116 to 858,051
_838
HP15_839: HP15_839 - iron-hydroxamate transporter ATP-binding subunit, at 858,041 to 858,814
_839
HP15_840: HP15_840 - ABC transporter, transmembrane region: ABC transporter, at 858,883 to 860,685
_840
Position (kb) 858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 857.052 kb on - strand at 857.272 kb on + strand, within HP15_838 at 857.279 kb on + strand, within HP15_838 at 857.334 kb on - strand, within HP15_838 at 857.334 kb on - strand, within HP15_838 at 857.384 kb on + strand, within HP15_838 at 857.398 kb on - strand, within HP15_838 at 857.406 kb on + strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.414 kb on - strand, within HP15_838 at 857.617 kb on - strand, within HP15_838 at 857.648 kb on - strand, within HP15_838 at 857.648 kb on - strand, within HP15_838 at 857.669 kb on + strand, within HP15_838 at 857.674 kb on + strand, within HP15_838 at 857.697 kb on + strand, within HP15_838 at 857.697 kb on + strand, within HP15_838 at 857.828 kb on - strand, within HP15_838 at 857.865 kb on + strand, within HP15_838 at 857.908 kb on - strand, within HP15_838 at 857.940 kb on + strand, within HP15_838 at 857.948 kb on - strand, within HP15_838 at 858.208 kb on + strand, within HP15_839 at 858.235 kb on + strand, within HP15_839 at 858.271 kb on + strand, within HP15_839 at 858.279 kb on + strand, within HP15_839 at 858.279 kb on - strand, within HP15_839 at 858.300 kb on - strand, within HP15_839 at 858.317 kb on - strand, within HP15_839 at 858.339 kb on - strand, within HP15_839 at 858.342 kb on + strand, within HP15_839 at 858.403 kb on - strand, within HP15_839 at 858.413 kb on - strand, within HP15_839 at 858.426 kb on + strand, within HP15_839 at 858.471 kb on - strand, within HP15_839 at 858.669 kb on + strand, within HP15_839 at 858.738 kb on - strand at 858.757 kb on - strand at 858.765 kb on - strand at 858.787 kb on + strand at 858.838 kb on - strand at 858.905 kb on - strand at 858.920 kb on - strand at 858.935 kb on + strand at 859.033 kb on - strand at 859.063 kb on - strand at 859.067 kb on - strand, within HP15_840 at 859.077 kb on + strand, within HP15_840 at 859.172 kb on - strand, within HP15_840 at 859.214 kb on - strand, within HP15_840 at 859.234 kb on + strand, within HP15_840 at 859.241 kb on + strand, within HP15_840 at 859.242 kb on - strand, within HP15_840 at 859.242 kb on - strand, within HP15_840 at 859.368 kb on - strand, within HP15_840 at 859.469 kb on - strand, within HP15_840 at 859.562 kb on - strand, within HP15_840 at 859.619 kb on - strand, within HP15_840 at 859.773 kb on + strand, within HP15_840 at 859.781 kb on - strand, within HP15_840 at 859.781 kb on - strand, within HP15_840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 857,052 - +0.3 857,272 + HP15_838 0.17 +1.4 857,279 + HP15_838 0.17 +1.4 857,334 - HP15_838 0.23 -0.1 857,334 - HP15_838 0.23 +0.4 857,384 + HP15_838 0.29 +1.6 857,398 - HP15_838 0.30 -0.9 857,406 + HP15_838 0.31 -0.1 857,414 - HP15_838 0.32 -3.0 857,414 - HP15_838 0.32 -1.1 857,414 - HP15_838 0.32 -0.6 857,617 - HP15_838 0.54 -0.1 857,648 - HP15_838 0.57 -0.5 857,648 - HP15_838 0.57 -0.1 857,669 + HP15_838 0.59 -1.1 857,674 + HP15_838 0.60 -1.1 857,697 + HP15_838 0.62 -1.6 857,697 + HP15_838 0.62 +0.4 857,828 - HP15_838 0.76 +2.7 857,865 + HP15_838 0.80 +1.4 857,908 - HP15_838 0.85 +0.4 857,940 + HP15_838 0.88 +0.3 857,948 - HP15_838 0.89 +2.3 858,208 + HP15_839 0.22 -0.9 858,235 + HP15_839 0.25 -0.4 858,271 + HP15_839 0.30 -0.3 858,279 + HP15_839 0.31 -0.1 858,279 - HP15_839 0.31 -1.7 858,300 - HP15_839 0.33 +0.3 858,317 - HP15_839 0.36 +0.8 858,339 - HP15_839 0.39 -0.6 858,342 + HP15_839 0.39 +0.1 858,403 - HP15_839 0.47 +1.1 858,413 - HP15_839 0.48 -0.6 858,426 + HP15_839 0.50 +1.4 858,471 - HP15_839 0.56 +2.8 858,669 + HP15_839 0.81 +0.5 858,738 - -1.9 858,757 - -0.1 858,765 - +0.4 858,787 + -0.1 858,838 - +0.1 858,905 - -0.9 858,920 - +0.4 858,935 + +1.9 859,033 - +0.6 859,063 - -2.0 859,067 - HP15_840 0.10 -0.6 859,077 + HP15_840 0.11 -0.1 859,172 - HP15_840 0.16 +0.4 859,214 - HP15_840 0.18 +0.5 859,234 + HP15_840 0.19 +0.0 859,241 + HP15_840 0.20 -1.8 859,242 - HP15_840 0.20 +0.1 859,242 - HP15_840 0.20 +0.1 859,368 - HP15_840 0.27 +0.2 859,469 - HP15_840 0.33 -2.6 859,562 - HP15_840 0.38 -0.6 859,619 - HP15_840 0.41 -0.9 859,773 + HP15_840 0.49 -2.6 859,781 - HP15_840 0.50 +1.0 859,781 - HP15_840 0.50 +0.1
Or see this region's nucleotide sequence