Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_791 and HP15_792 overlap by 4 nucleotides HP15_792 and HP15_793 are separated by 136 nucleotides HP15_793 and HP15_794 are separated by 32 nucleotides HP15_794 and HP15_795 are separated by 143 nucleotides
HP15_791: HP15_791 - (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA, at 804,384 to 806,657
_791
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
HP15_794: HP15_794 - conserved hypothetical protein, at 808,025 to 808,258
_794
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
Position (kb) 807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 806.650 kb on - strand at 806.664 kb on - strand at 806.665 kb on - strand at 806.726 kb on - strand at 806.726 kb on - strand at 806.771 kb on - strand, within HP15_792 at 806.781 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.176 kb on - strand, within HP15_792 at 807.226 kb on + strand, within HP15_792 at 807.234 kb on - strand, within HP15_792 at 807.337 kb on + strand, within HP15_792 at 807.350 kb on - strand, within HP15_792 at 807.475 kb on + strand at 807.510 kb on + strand at 807.822 kb on - strand, within HP15_793 at 808.079 kb on + strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.103 kb on + strand, within HP15_794 at 808.186 kb on + strand, within HP15_794 at 808.279 kb on + strand at 808.365 kb on + strand at 808.449 kb on + strand at 808.664 kb on - strand, within HP15_795 at 808.768 kb on - strand, within HP15_795 at 808.843 kb on - strand, within HP15_795 at 808.942 kb on - strand, within HP15_795
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 806,650 - -0.1 806,664 - -0.9 806,665 - -2.7 806,726 - +1.4 806,726 - -1.0 806,771 - HP15_792 0.14 -0.9 806,781 - HP15_792 0.15 +0.7 807,042 - HP15_792 0.45 +1.4 807,042 - HP15_792 0.45 -0.4 807,176 - HP15_792 0.61 +0.7 807,226 + HP15_792 0.67 -1.4 807,234 - HP15_792 0.68 -2.8 807,337 + HP15_792 0.80 -1.4 807,350 - HP15_792 0.81 +3.2 807,475 + -0.4 807,510 + -2.9 807,822 - HP15_793 0.50 -1.9 808,079 + HP15_794 0.23 -0.2 808,087 - HP15_794 0.26 +1.0 808,087 - HP15_794 0.26 -1.4 808,103 + HP15_794 0.33 -2.9 808,186 + HP15_794 0.69 -2.8 808,279 + +1.4 808,365 + -0.3 808,449 + +0.9 808,664 - HP15_795 0.10 +0.2 808,768 - HP15_795 0.14 +2.5 808,843 - HP15_795 0.17 -0.3 808,942 - HP15_795 0.21 -0.9
Or see this region's nucleotide sequence