Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07450

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c07440 and PGA1_c07450 are separated by 66 nucleotidesPGA1_c07450 and PGA1_c07460 are separated by 51 nucleotidesPGA1_c07460 and PGA1_c07465 are separated by 294 nucleotides PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885 _c07440 PGA1_c07450: PGA1_c07450 - putative NAD dependent epimerase/dehydratase, at 768,952 to 769,548 _c07450 PGA1_c07460: PGA1_c07460 - glutathione S-transferase domain-containing protein, at 769,600 to 770,214 _c07460 PGA1_c07465: PGA1_c07465 - putative dksA/traR C4-type zinc finger protein, at 770,509 to 770,778 _c07465 Position (kb) 768 769 770Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 767.988 kb on - strand, within PGA1_c07440at 768.018 kb on + strand, within PGA1_c07440at 768.024 kb on + strand, within PGA1_c07440at 768.083 kb on + strand, within PGA1_c07440at 768.092 kb on + strand, within PGA1_c07440at 768.110 kb on - strand, within PGA1_c07440at 768.221 kb on - strand, within PGA1_c07440at 768.250 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.275 kb on + strand, within PGA1_c07440at 768.283 kb on - strand, within PGA1_c07440at 768.309 kb on - strand, within PGA1_c07440at 768.314 kb on - strand, within PGA1_c07440at 768.314 kb on - strand, within PGA1_c07440at 768.384 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.395 kb on + strand, within PGA1_c07440at 768.403 kb on - strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.405 kb on + strand, within PGA1_c07440at 768.455 kb on + strand, within PGA1_c07440at 768.460 kb on + strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.463 kb on - strand, within PGA1_c07440at 768.465 kb on + strand, within PGA1_c07440at 768.534 kb on - strand, within PGA1_c07440at 768.534 kb on - strand, within PGA1_c07440at 768.554 kb on + strand, within PGA1_c07440at 768.572 kb on - strand, within PGA1_c07440at 768.589 kb on + strand, within PGA1_c07440at 768.715 kb on - strand, within PGA1_c07440at 768.732 kb on + strand, within PGA1_c07440at 768.734 kb on + strand, within PGA1_c07440at 768.790 kb on + strandat 768.790 kb on + strandat 768.881 kb on - strandat 768.896 kb on + strandat 768.896 kb on + strandat 768.896 kb on + strandat 768.904 kb on - strandat 768.971 kb on - strandat 769.053 kb on - strand, within PGA1_c07450at 769.112 kb on - strand, within PGA1_c07450at 769.119 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.129 kb on + strand, within PGA1_c07450at 769.137 kb on - strand, within PGA1_c07450at 769.137 kb on - strand, within PGA1_c07450at 769.144 kb on + strand, within PGA1_c07450at 769.166 kb on + strand, within PGA1_c07450at 769.378 kb on - strand, within PGA1_c07450at 769.456 kb on + strand, within PGA1_c07450at 769.456 kb on + strand, within PGA1_c07450at 769.464 kb on - strand, within PGA1_c07450at 769.477 kb on - strand, within PGA1_c07450at 769.478 kb on - strand, within PGA1_c07450at 769.478 kb on - strand, within PGA1_c07450at 769.525 kb on + strandat 769.619 kb on + strandat 769.625 kb on + strandat 769.633 kb on - strandat 769.633 kb on - strandat 769.678 kb on - strand, within PGA1_c07460at 769.686 kb on + strand, within PGA1_c07460at 769.694 kb on - strand, within PGA1_c07460at 769.801 kb on - strand, within PGA1_c07460at 769.819 kb on + strand, within PGA1_c07460at 769.827 kb on - strand, within PGA1_c07460at 769.836 kb on - strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.864 kb on + strand, within PGA1_c07460at 769.870 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.872 kb on - strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.878 kb on + strand, within PGA1_c07460at 769.886 kb on + strand, within PGA1_c07460at 769.886 kb on - strand, within PGA1_c07460at 769.947 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.965 kb on - strand, within PGA1_c07460at 769.992 kb on + strand, within PGA1_c07460at 770.086 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.100 kb on - strand, within PGA1_c07460at 770.118 kb on + strand, within PGA1_c07460at 770.125 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.135 kb on + strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.143 kb on - strand, within PGA1_c07460at 770.260 kb on - strandat 770.328 kb on + strandat 770.396 kb on + strandat 770.410 kb on - strandat 770.481 kb on + strandat 770.482 kb on + strandat 770.482 kb on + strandat 770.489 kb on - strandat 770.490 kb on - strandat 770.519 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
767,988 - PGA1_c07440 0.15 -0.7
768,018 + PGA1_c07440 0.18 +1.5
768,024 + PGA1_c07440 0.19 -2.4
768,083 + PGA1_c07440 0.24 +0.6
768,092 + PGA1_c07440 0.25 -0.2
768,110 - PGA1_c07440 0.27 +0.3
768,221 - PGA1_c07440 0.37 +0.1
768,250 + PGA1_c07440 0.40 +1.0
768,275 + PGA1_c07440 0.42 +1.2
768,275 + PGA1_c07440 0.42 -0.4
768,275 + PGA1_c07440 0.42 +0.0
768,275 + PGA1_c07440 0.42 +1.1
768,275 + PGA1_c07440 0.42 +0.1
768,283 - PGA1_c07440 0.43 -0.5
768,309 - PGA1_c07440 0.46 +0.5
768,314 - PGA1_c07440 0.46 +1.3
768,314 - PGA1_c07440 0.46 -1.5
768,384 + PGA1_c07440 0.53 +0.7
768,395 + PGA1_c07440 0.54 -0.8
768,395 + PGA1_c07440 0.54 +0.7
768,395 + PGA1_c07440 0.54 +0.5
768,403 - PGA1_c07440 0.55 +0.2
768,405 + PGA1_c07440 0.55 -1.9
768,405 + PGA1_c07440 0.55 +0.2
768,405 + PGA1_c07440 0.55 -0.0
768,455 + PGA1_c07440 0.59 +0.0
768,460 + PGA1_c07440 0.60 +0.9
768,463 - PGA1_c07440 0.60 -0.0
768,463 - PGA1_c07440 0.60 +0.3
768,463 - PGA1_c07440 0.60 +0.3
768,465 + PGA1_c07440 0.60 -0.0
768,534 - PGA1_c07440 0.67 -3.1
768,534 - PGA1_c07440 0.67 -1.4
768,554 + PGA1_c07440 0.69 +0.9
768,572 - PGA1_c07440 0.70 +1.2
768,589 + PGA1_c07440 0.72 +2.0
768,715 - PGA1_c07440 0.84 -0.5
768,732 + PGA1_c07440 0.85 +0.2
768,734 + PGA1_c07440 0.86 +3.8
768,790 + +0.1
768,790 + +1.4
768,881 - +0.4
768,896 + -1.3
768,896 + +1.2
768,896 + +1.4
768,904 - -2.8
768,971 - +0.6
769,053 - PGA1_c07450 0.17 -0.4
769,112 - PGA1_c07450 0.27 +0.3
769,119 + PGA1_c07450 0.28 -0.5
769,129 + PGA1_c07450 0.30 -3.0
769,129 + PGA1_c07450 0.30 -1.6
769,129 + PGA1_c07450 0.30 +1.1
769,129 + PGA1_c07450 0.30 +0.3
769,137 - PGA1_c07450 0.31 -0.4
769,137 - PGA1_c07450 0.31 +0.5
769,144 + PGA1_c07450 0.32 +1.4
769,166 + PGA1_c07450 0.36 +0.6
769,378 - PGA1_c07450 0.71 -0.2
769,456 + PGA1_c07450 0.84 -1.9
769,456 + PGA1_c07450 0.84 -0.5
769,464 - PGA1_c07450 0.86 +0.3
769,477 - PGA1_c07450 0.88 +0.6
769,478 - PGA1_c07450 0.88 -1.4
769,478 - PGA1_c07450 0.88 -0.2
769,525 + +0.5
769,619 + +0.4
769,625 + -1.4
769,633 - +2.2
769,633 - -2.2
769,678 - PGA1_c07460 0.13 -0.5
769,686 + PGA1_c07460 0.14 -1.2
769,694 - PGA1_c07460 0.15 +0.8
769,801 - PGA1_c07460 0.33 +0.4
769,819 + PGA1_c07460 0.36 -0.5
769,827 - PGA1_c07460 0.37 -1.8
769,836 - PGA1_c07460 0.38 -1.2
769,864 + PGA1_c07460 0.43 -1.7
769,864 + PGA1_c07460 0.43 -0.2
769,864 + PGA1_c07460 0.43 -1.2
769,864 + PGA1_c07460 0.43 +1.4
769,864 + PGA1_c07460 0.43 +0.9
769,870 - PGA1_c07460 0.44 +0.6
769,872 - PGA1_c07460 0.44 +0.3
769,872 - PGA1_c07460 0.44 -0.1
769,878 + PGA1_c07460 0.45 +0.0
769,878 + PGA1_c07460 0.45 +2.1
769,886 + PGA1_c07460 0.47 +1.2
769,886 - PGA1_c07460 0.47 -0.7
769,947 - PGA1_c07460 0.56 +0.2
769,965 - PGA1_c07460 0.59 +1.0
769,965 - PGA1_c07460 0.59 -1.8
769,992 + PGA1_c07460 0.64 -2.8
770,086 - PGA1_c07460 0.79 +1.4
770,100 - PGA1_c07460 0.81 -1.4
770,100 - PGA1_c07460 0.81 -2.4
770,118 + PGA1_c07460 0.84 -2.2
770,125 + PGA1_c07460 0.85 +1.0
770,135 + PGA1_c07460 0.87 +0.5
770,135 + PGA1_c07460 0.87 -1.2
770,135 + PGA1_c07460 0.87 +1.5
770,135 + PGA1_c07460 0.87 -1.2
770,135 + PGA1_c07460 0.87 +0.8
770,135 + PGA1_c07460 0.87 +1.5
770,135 + PGA1_c07460 0.87 +0.7
770,135 + PGA1_c07460 0.87 +0.2
770,135 + PGA1_c07460 0.87 -0.6
770,135 + PGA1_c07460 0.87 +0.5
770,135 + PGA1_c07460 0.87 -0.6
770,135 + PGA1_c07460 0.87 +0.4
770,135 + PGA1_c07460 0.87 +1.4
770,135 + PGA1_c07460 0.87 +0.3
770,135 + PGA1_c07460 0.87 +1.2
770,135 + PGA1_c07460 0.87 +1.9
770,135 + PGA1_c07460 0.87 -0.3
770,135 + PGA1_c07460 0.87 +0.8
770,135 + PGA1_c07460 0.87 +0.1
770,135 + PGA1_c07460 0.87 +0.3
770,135 + PGA1_c07460 0.87 +2.6
770,143 - PGA1_c07460 0.88 -1.3
770,143 - PGA1_c07460 0.88 -3.3
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 -0.3
770,143 - PGA1_c07460 0.88 +1.4
770,143 - PGA1_c07460 0.88 +1.4
770,143 - PGA1_c07460 0.88 -2.4
770,143 - PGA1_c07460 0.88 -0.4
770,143 - PGA1_c07460 0.88 -3.1
770,143 - PGA1_c07460 0.88 +2.4
770,143 - PGA1_c07460 0.88 +2.1
770,143 - PGA1_c07460 0.88 -0.8
770,143 - PGA1_c07460 0.88 -0.8
770,143 - PGA1_c07460 0.88 +0.1
770,143 - PGA1_c07460 0.88 -0.9
770,143 - PGA1_c07460 0.88 -0.7
770,143 - PGA1_c07460 0.88 +0.2
770,143 - PGA1_c07460 0.88 +1.7
770,143 - PGA1_c07460 0.88 -0.2
770,143 - PGA1_c07460 0.88 -0.4
770,143 - PGA1_c07460 0.88 -1.2
770,143 - PGA1_c07460 0.88 +1.3
770,143 - PGA1_c07460 0.88 +0.4
770,143 - PGA1_c07460 0.88 +0.7
770,143 - PGA1_c07460 0.88 +0.4
770,143 - PGA1_c07460 0.88 -0.6
770,143 - PGA1_c07460 0.88 +0.3
770,143 - PGA1_c07460 0.88 +1.5
770,143 - PGA1_c07460 0.88 +1.6
770,143 - PGA1_c07460 0.88 +0.9
770,143 - PGA1_c07460 0.88 -0.2
770,143 - PGA1_c07460 0.88 +0.9
770,260 - +1.0
770,328 + +0.3
770,396 + +1.1
770,410 - -0.8
770,481 + +2.2
770,482 + +1.4
770,482 + -0.3
770,489 - +1.0
770,490 - +0.1
770,519 - +0.3

Or see this region's nucleotide sequence