Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0730

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0728 and Psest_0729 are separated by 50 nucleotidesPsest_0729 and Psest_0730 are separated by 52 nucleotidesPsest_0730 and Psest_0731 are separated by 157 nucleotides Psest_0728: Psest_0728 - hydrolase, TatD family, at 798,406 to 799,191 _0728 Psest_0729: Psest_0729 - hypothetical protein, at 799,242 to 799,484 _0729 Psest_0730: Psest_0730 - O-6-methylguanine DNA methyltransferase, at 799,537 to 800,577 _0730 Psest_0731: Psest_0731 - Serine/threonine protein kinase involved in cell cycle control, at 800,735 to 801,625 _0731 Position (kb) 799 800 801Strain fitness (log2 ratio) -2 -1 0 1 2 3at 798.545 kb on + strand, within Psest_0728at 798.645 kb on + strand, within Psest_0728at 798.686 kb on + strand, within Psest_0728at 798.686 kb on + strand, within Psest_0728at 798.687 kb on - strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.790 kb on + strand, within Psest_0728at 798.791 kb on - strand, within Psest_0728at 798.791 kb on - strand, within Psest_0728at 798.791 kb on - strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.884 kb on + strand, within Psest_0728at 798.885 kb on - strand, within Psest_0728at 798.885 kb on - strand, within Psest_0728at 798.885 kb on - strand, within Psest_0728at 798.887 kb on + strand, within Psest_0728at 798.887 kb on + strand, within Psest_0728at 798.888 kb on - strand, within Psest_0728at 798.888 kb on - strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.019 kb on + strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.020 kb on - strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.023 kb on + strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.024 kb on - strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.075 kb on + strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.076 kb on - strand, within Psest_0728at 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.232 kb on + strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.233 kb on - strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.514 kb on + strandat 799.515 kb on - strandat 799.515 kb on - strandat 799.515 kb on - strandat 799.515 kb on - strandat 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.971 kb on + strand, within Psest_0730at 799.972 kb on - strand, within Psest_0730at 799.972 kb on - strand, within Psest_0730at 800.429 kb on + strand, within Psest_0730at 800.429 kb on + strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.430 kb on - strand, within Psest_0730at 800.654 kb on + strandat 800.654 kb on + strandat 800.654 kb on + strandat 800.655 kb on - strandat 800.655 kb on - strandat 800.655 kb on - strandat 800.655 kb on - strandat 800.747 kb on - strandat 800.826 kb on + strand, within Psest_0731at 800.826 kb on + strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.827 kb on - strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.828 kb on + strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.829 kb on - strand, within Psest_0731at 800.870 kb on + strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.871 kb on - strand, within Psest_0731at 800.912 kb on + strand, within Psest_0731at 800.938 kb on + strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 800.939 kb on - strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.240 kb on + strand, within Psest_0731at 801.368 kb on + strand, within Psest_0731at 801.369 kb on - strand, within Psest_0731

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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798,545 + Psest_0728 0.18 +1.6
798,645 + Psest_0728 0.30 +0.2
798,686 + Psest_0728 0.36 -1.0
798,686 + Psest_0728 0.36 +2.0
798,687 - Psest_0728 0.36 +2.0
798,790 + Psest_0728 0.49 -1.7
798,790 + Psest_0728 0.49 -0.4
798,790 + Psest_0728 0.49 -0.7
798,790 + Psest_0728 0.49 -0.6
798,791 - Psest_0728 0.49 -1.4
798,791 - Psest_0728 0.49 +2.7
798,791 - Psest_0728 0.49 +2.0
798,884 + Psest_0728 0.61 +1.0
798,884 + Psest_0728 0.61 -0.0
798,884 + Psest_0728 0.61 -0.8
798,884 + Psest_0728 0.61 +0.1
798,884 + Psest_0728 0.61 -0.3
798,884 + Psest_0728 0.61 -1.4
798,884 + Psest_0728 0.61 +2.0
798,885 - Psest_0728 0.61 +1.2
798,885 - Psest_0728 0.61 +1.7
798,885 - Psest_0728 0.61 -0.3
798,887 + Psest_0728 0.61 +0.3
798,887 + Psest_0728 0.61 +0.4
798,888 - Psest_0728 0.61 -0.4
798,888 - Psest_0728 0.61 -0.0
799,019 + Psest_0728 0.78 +1.5
799,019 + Psest_0728 0.78 -1.3
799,019 + Psest_0728 0.78 -0.4
799,019 + Psest_0728 0.78 -0.8
799,019 + Psest_0728 0.78 +2.0
799,020 - Psest_0728 0.78 +2.2
799,020 - Psest_0728 0.78 +1.4
799,020 - Psest_0728 0.78 +0.9
799,020 - Psest_0728 0.78 +0.3
799,020 - Psest_0728 0.78 +0.5
799,020 - Psest_0728 0.78 -0.0
799,020 - Psest_0728 0.78 -2.1
799,023 + Psest_0728 0.78 -2.5
799,023 + Psest_0728 0.78 +0.4
799,023 + Psest_0728 0.78 -0.8
799,023 + Psest_0728 0.78 -0.2
799,024 - Psest_0728 0.79 +1.2
799,024 - Psest_0728 0.79 +1.2
799,024 - Psest_0728 0.79 +0.4
799,024 - Psest_0728 0.79 +0.4
799,075 + Psest_0728 0.85 -0.0
799,075 + Psest_0728 0.85 -1.4
799,075 + Psest_0728 0.85 -0.2
799,075 + Psest_0728 0.85 -0.6
799,075 + Psest_0728 0.85 +1.6
799,075 + Psest_0728 0.85 -0.1
799,076 - Psest_0728 0.85 +1.4
799,076 - Psest_0728 0.85 -0.7
799,076 - Psest_0728 0.85 -0.4
799,076 - Psest_0728 0.85 -1.2
799,076 - Psest_0728 0.85 +0.4
799,076 - Psest_0728 0.85 +0.7
799,076 - Psest_0728 0.85 -0.2
799,232 + +1.6
799,232 + -0.1
799,232 + -0.2
799,232 + +1.3
799,232 + +0.0
799,232 + +0.4
799,232 + +1.0
799,232 + +1.0
799,232 + +0.6
799,232 + -0.6
799,232 + -0.8
799,232 + -0.6
799,232 + -1.4
799,232 + -0.0
799,233 - +1.0
799,233 - +0.2
799,233 - -0.0
799,233 - +0.6
799,233 - +0.6
799,233 - -0.0
799,233 - -0.4
799,233 - -0.0
799,233 - +1.6
799,233 - +0.6
799,233 - +2.0
799,233 - +0.4
799,233 - +0.4
799,233 - +1.0
799,233 - +2.0
799,233 - +1.2
799,233 - +1.0
799,233 - +0.5
799,233 - -0.8
799,233 - +0.4
799,233 - +0.4
799,233 - +0.5
799,233 - +0.0
799,233 - +0.5
799,514 + +1.0
799,514 + -1.2
799,514 + -0.4
799,514 + -1.7
799,514 + +2.0
799,514 + +3.0
799,514 + -0.4
799,514 + +3.0
799,515 - +2.0
799,515 - +0.8
799,515 - +0.8
799,515 - +0.7
799,971 + Psest_0730 0.42 +1.6
799,971 + Psest_0730 0.42 +2.0
799,971 + Psest_0730 0.42 +1.0
799,971 + Psest_0730 0.42 +2.0
799,971 + Psest_0730 0.42 +1.0
799,972 - Psest_0730 0.42 +1.4
799,972 - Psest_0730 0.42 +1.4
800,429 + Psest_0730 0.86 +1.2
800,429 + Psest_0730 0.86 +2.0
800,430 - Psest_0730 0.86 +1.4
800,430 - Psest_0730 0.86 +2.0
800,430 - Psest_0730 0.86 +1.0
800,430 - Psest_0730 0.86 +0.3
800,430 - Psest_0730 0.86 -0.4
800,654 + +1.0
800,654 + +0.4
800,654 + +2.0
800,655 - +1.0
800,655 - +1.0
800,655 - +2.0
800,655 - -0.6
800,747 - +1.0
800,826 + Psest_0731 0.10 -0.1
800,826 + Psest_0731 0.10 +0.4
800,827 - Psest_0731 0.10 -2.0
800,827 - Psest_0731 0.10 -0.6
800,827 - Psest_0731 0.10 -0.0
800,827 - Psest_0731 0.10 +0.4
800,827 - Psest_0731 0.10 -0.4
800,827 - Psest_0731 0.10 -0.0
800,827 - Psest_0731 0.10 -0.5
800,827 - Psest_0731 0.10 +0.6
800,827 - Psest_0731 0.10 +0.2
800,828 + Psest_0731 0.10 -0.0
800,828 + Psest_0731 0.10 -1.0
800,828 + Psest_0731 0.10 +3.3
800,828 + Psest_0731 0.10 -1.5
800,828 + Psest_0731 0.10 -0.0
800,828 + Psest_0731 0.10 -0.0
800,828 + Psest_0731 0.10 +0.4
800,828 + Psest_0731 0.10 +1.0
800,828 + Psest_0731 0.10 +2.0
800,828 + Psest_0731 0.10 -0.4
800,828 + Psest_0731 0.10 -1.7
800,828 + Psest_0731 0.10 +0.2
800,828 + Psest_0731 0.10 -0.8
800,828 + Psest_0731 0.10 -0.8
800,828 + Psest_0731 0.10 -0.7
800,828 + Psest_0731 0.10 -0.0
800,828 + Psest_0731 0.10 -1.5
800,828 + Psest_0731 0.10 +0.4
800,828 + Psest_0731 0.10 -2.0
800,828 + Psest_0731 0.10 -0.7
800,828 + Psest_0731 0.10 +0.4
800,829 - Psest_0731 0.11 -0.6
800,829 - Psest_0731 0.11 +0.4
800,829 - Psest_0731 0.11 -1.4
800,829 - Psest_0731 0.11 +1.0
800,829 - Psest_0731 0.11 +0.4
800,829 - Psest_0731 0.11 +0.6
800,829 - Psest_0731 0.11 +0.4
800,829 - Psest_0731 0.11 +2.0
800,829 - Psest_0731 0.11 -0.8
800,829 - Psest_0731 0.11 +2.0
800,829 - Psest_0731 0.11 -0.8
800,829 - Psest_0731 0.11 +2.0
800,829 - Psest_0731 0.11 -0.6
800,829 - Psest_0731 0.11 +1.0
800,829 - Psest_0731 0.11 -1.4
800,829 - Psest_0731 0.11 +2.0
800,829 - Psest_0731 0.11 +3.3
800,829 - Psest_0731 0.11 -1.2
800,829 - Psest_0731 0.11 -0.6
800,829 - Psest_0731 0.11 +0.4
800,829 - Psest_0731 0.11 -1.0
800,829 - Psest_0731 0.11 +1.4
800,870 + Psest_0731 0.15 +0.8
800,871 - Psest_0731 0.15 -0.6
800,871 - Psest_0731 0.15 -0.8
800,871 - Psest_0731 0.15 -0.3
800,871 - Psest_0731 0.15 +2.0
800,912 + Psest_0731 0.20 -1.7
800,938 + Psest_0731 0.23 +0.4
800,939 - Psest_0731 0.23 -1.7
800,939 - Psest_0731 0.23 -0.0
801,240 + Psest_0731 0.57 +1.2
801,240 + Psest_0731 0.57 -0.0
801,368 + Psest_0731 0.71 +1.2
801,369 - Psest_0731 0.71 -1.7

Or see this region's nucleotide sequence