Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_674 and HP15_675 are separated by 117 nucleotides HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides HP15_678 and HP15_679 are separated by 9 nucleotides HP15_679 and HP15_680 are separated by 76 nucleotides
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
HP15_680: HP15_680 - conserved hypothetical protein, at 697,421 to 697,642
_680
Position (kb) 696
697 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand at 697.167 kb on - strand, within HP15_679 at 697.245 kb on + strand, within HP15_679 at 697.253 kb on - strand, within HP15_679 at 697.351 kb on - strand at 697.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 695,167 - +2.3 695,227 + +4.1 695,233 + +2.9 695,233 - +4.8 695,250 - +2.9 695,271 + +4.1 695,320 - HP15_675 0.11 +3.8 695,322 + HP15_675 0.12 +2.1 695,426 - HP15_675 0.36 +5.1 695,532 + HP15_675 0.60 +5.4 695,537 + HP15_675 0.61 +4.9 695,571 - HP15_675 0.69 +4.3 695,603 + HP15_675 0.77 +1.4 695,609 + HP15_675 0.78 +5.8 695,617 - HP15_675 0.80 +4.3 695,659 - HP15_675 0.90 +2.9 695,710 + +4.8 695,766 - HP15_676 0.12 +3.6 695,801 + HP15_676 0.20 +4.0 695,860 + HP15_676 0.34 +4.2 695,860 + HP15_676 0.34 +4.1 695,914 - HP15_676 0.47 +3.8 695,957 + HP15_676 0.57 +4.1 695,957 - HP15_676 0.57 +3.5 696,085 + HP15_676 0.87 +4.3 696,092 + HP15_676 0.88 +5.6 696,235 + HP15_677 0.29 +6.4 696,292 - HP15_677 0.48 +5.1 696,311 - HP15_677 0.54 +6.5 696,322 - HP15_677 0.58 +5.3 696,412 - HP15_677 0.87 +5.2 696,419 - HP15_677 0.89 +5.3 696,501 + +4.8 696,520 - +2.8 696,549 + +5.0 696,549 + +6.1 696,557 - +5.2 696,635 + HP15_678 0.17 +7.2 696,641 - HP15_678 0.18 +5.2 696,641 - HP15_678 0.18 +2.9 696,641 - HP15_678 0.18 +5.3 696,736 - HP15_678 0.36 +6.2 696,784 + HP15_678 0.45 +4.0 696,789 + HP15_678 0.46 +5.9 696,789 + HP15_678 0.46 +4.6 696,789 + HP15_678 0.46 +3.7 696,797 - HP15_678 0.47 +3.8 696,914 + HP15_678 0.69 +6.0 696,935 + HP15_678 0.73 +4.5 696,994 + HP15_678 0.84 +4.9 697,021 - HP15_678 0.89 +4.5 697,022 + HP15_678 0.90 +4.7 697,084 + +5.0 697,092 - +3.6 697,167 - HP15_679 0.31 +2.4 697,245 + HP15_679 0.61 +4.9 697,253 - HP15_679 0.64 +4.3 697,351 - +3.3 697,391 + +5.3
Or see this region's nucleotide sequence