Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_645 and HP15_646 are separated by 232 nucleotides HP15_646 and HP15_647 are separated by 153 nucleotides
HP15_645: HP15_645 - conserved hypothetical protein, at 668,498 to 669,187
_645
HP15_646: HP15_646 - hypothetical protein, at 669,420 to 669,770
_646
HP15_647: HP15_647 - conserved hypothetical protein, secreted, at 669,924 to 670,652
_647
Position (kb) 669
670 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 668.462 kb on - strand at 668.565 kb on + strand at 668.565 kb on + strand at 668.573 kb on - strand, within HP15_645 at 668.679 kb on + strand, within HP15_645 at 668.684 kb on + strand, within HP15_645 at 668.694 kb on + strand, within HP15_645 at 668.724 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 669.023 kb on + strand, within HP15_645 at 669.278 kb on + strand at 669.278 kb on + strand at 669.286 kb on + strand at 669.286 kb on - strand at 669.329 kb on + strand at 669.364 kb on + strand at 669.427 kb on + strand at 669.483 kb on + strand, within HP15_646 at 669.483 kb on + strand, within HP15_646 at 669.491 kb on - strand, within HP15_646 at 669.564 kb on - strand, within HP15_646 at 669.705 kb on - strand, within HP15_646 at 669.737 kb on + strand at 669.798 kb on + strand at 670.220 kb on + strand, within HP15_647 at 670.293 kb on + strand, within HP15_647 at 670.363 kb on - strand, within HP15_647 at 670.378 kb on + strand, within HP15_647 at 670.386 kb on - strand, within HP15_647 at 670.405 kb on + strand, within HP15_647 at 670.423 kb on - strand, within HP15_647 at 670.448 kb on + strand, within HP15_647 at 670.499 kb on - strand, within HP15_647 at 670.516 kb on + strand, within HP15_647 at 670.519 kb on - strand, within HP15_647 at 670.519 kb on - strand, within HP15_647 at 670.524 kb on - strand, within HP15_647 at 670.595 kb on + strand at 670.595 kb on + strand at 670.654 kb on - strand at 670.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 668,462 - +0.3 668,565 + -3.3 668,565 + +0.2 668,573 - HP15_645 0.11 -1.8 668,679 + HP15_645 0.26 +0.0 668,684 + HP15_645 0.27 -0.6 668,694 + HP15_645 0.28 -0.2 668,724 - HP15_645 0.33 +0.3 668,767 - HP15_645 0.39 +0.8 668,767 - HP15_645 0.39 +0.1 668,767 - HP15_645 0.39 -1.0 668,767 - HP15_645 0.39 +0.0 668,860 - HP15_645 0.52 -0.1 668,860 - HP15_645 0.52 +0.4 669,023 + HP15_645 0.76 -0.6 669,278 + +0.5 669,278 + -0.1 669,286 + +2.4 669,286 - -0.9 669,329 + +0.0 669,364 + -2.2 669,427 + -3.0 669,483 + HP15_646 0.18 +2.7 669,483 + HP15_646 0.18 -0.6 669,491 - HP15_646 0.20 +0.4 669,564 - HP15_646 0.41 -2.1 669,705 - HP15_646 0.81 -0.1 669,737 + -2.1 669,798 + -0.3 670,220 + HP15_647 0.41 +0.8 670,293 + HP15_647 0.51 +1.6 670,363 - HP15_647 0.60 -1.6 670,378 + HP15_647 0.62 -0.7 670,386 - HP15_647 0.63 +0.8 670,405 + HP15_647 0.66 -1.1 670,423 - HP15_647 0.68 -2.2 670,448 + HP15_647 0.72 -1.2 670,499 - HP15_647 0.79 +0.0 670,516 + HP15_647 0.81 +0.3 670,519 - HP15_647 0.82 -1.8 670,519 - HP15_647 0.82 -0.8 670,524 - HP15_647 0.82 +0.4 670,595 + -0.8 670,595 + -0.7 670,654 - +0.9 670,663 + +0.2
Or see this region's nucleotide sequence