Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_642 and HP15_643 are separated by 80 nucleotides HP15_643 and HP15_644 are separated by 304 nucleotides HP15_644 and HP15_645 are separated by 355 nucleotides
HP15_642: HP15_642 - membrane protein, at 666,319 to 666,579
_642
HP15_643: HP15_643 - transmembrane pair domain protein, at 666,660 to 667,094
_643
HP15_644: HP15_644 - conserved hypothetical protein, secreted, at 667,399 to 668,142
_644
HP15_645: HP15_645 - conserved hypothetical protein, at 668,498 to 669,187
_645
Position (kb) 667
668
669 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 666.522 kb on + strand, within HP15_642 at 666.739 kb on + strand, within HP15_643 at 666.914 kb on + strand, within HP15_643 at 666.947 kb on - strand, within HP15_643 at 666.968 kb on - strand, within HP15_643 at 667.008 kb on + strand, within HP15_643 at 667.034 kb on + strand, within HP15_643 at 667.057 kb on - strand at 667.143 kb on + strand at 667.143 kb on + strand at 667.151 kb on - strand at 667.151 kb on - strand at 667.220 kb on + strand at 667.259 kb on - strand at 667.321 kb on + strand at 667.371 kb on - strand at 667.381 kb on - strand at 667.710 kb on + strand, within HP15_644 at 667.761 kb on - strand, within HP15_644 at 667.761 kb on - strand, within HP15_644 at 667.768 kb on + strand, within HP15_644 at 667.793 kb on + strand, within HP15_644 at 667.844 kb on + strand, within HP15_644 at 667.880 kb on - strand, within HP15_644 at 667.973 kb on - strand, within HP15_644 at 667.999 kb on - strand, within HP15_644 at 668.021 kb on + strand, within HP15_644 at 668.021 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.028 kb on + strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.029 kb on - strand, within HP15_644 at 668.249 kb on + strand at 668.249 kb on + strand at 668.283 kb on + strand at 668.462 kb on - strand at 668.565 kb on + strand at 668.565 kb on + strand at 668.573 kb on - strand, within HP15_645 at 668.679 kb on + strand, within HP15_645 at 668.684 kb on + strand, within HP15_645 at 668.694 kb on + strand, within HP15_645 at 668.724 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.767 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 668.860 kb on - strand, within HP15_645 at 669.023 kb on + strand, within HP15_645
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 666,522 + HP15_642 0.78 +0.4 666,739 + HP15_643 0.18 +0.1 666,914 + HP15_643 0.58 +0.8 666,947 - HP15_643 0.66 -0.3 666,968 - HP15_643 0.71 -1.3 667,008 + HP15_643 0.80 -0.6 667,034 + HP15_643 0.86 +1.2 667,057 - +1.2 667,143 + -0.5 667,143 + +2.4 667,151 - +0.3 667,151 - -2.0 667,220 + -1.0 667,259 - -0.6 667,321 + +0.5 667,371 - -1.0 667,381 - -0.3 667,710 + HP15_644 0.42 -0.5 667,761 - HP15_644 0.49 +1.4 667,761 - HP15_644 0.49 +2.4 667,768 + HP15_644 0.50 -0.3 667,793 + HP15_644 0.53 -1.0 667,844 + HP15_644 0.60 +0.4 667,880 - HP15_644 0.65 +1.0 667,973 - HP15_644 0.77 -0.5 667,999 - HP15_644 0.81 -1.2 668,021 + HP15_644 0.84 -2.1 668,021 + HP15_644 0.84 -0.5 668,028 + HP15_644 0.85 -0.9 668,028 + HP15_644 0.85 -3.2 668,028 + HP15_644 0.85 -1.2 668,029 - HP15_644 0.85 -2.7 668,029 - HP15_644 0.85 -1.2 668,029 - HP15_644 0.85 -1.0 668,029 - HP15_644 0.85 -1.2 668,029 - HP15_644 0.85 -1.0 668,249 + +1.4 668,249 + -0.3 668,283 + +1.2 668,462 - +0.3 668,565 + -3.3 668,565 + +0.2 668,573 - HP15_645 0.11 -1.8 668,679 + HP15_645 0.26 +0.0 668,684 + HP15_645 0.27 -0.6 668,694 + HP15_645 0.28 -0.2 668,724 - HP15_645 0.33 +0.3 668,767 - HP15_645 0.39 +0.8 668,767 - HP15_645 0.39 +0.1 668,767 - HP15_645 0.39 -1.0 668,767 - HP15_645 0.39 +0.0 668,860 - HP15_645 0.52 -0.1 668,860 - HP15_645 0.52 +0.4 669,023 + HP15_645 0.76 -0.6
Or see this region's nucleotide sequence