Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06340 and PGA1_c06350 are separated by 25 nucleotides PGA1_c06350 and PGA1_c06360 are separated by 241 nucleotides PGA1_c06360 and PGA1_c06370 are separated by 219 nucleotides
PGA1_c06340: PGA1_c06340 - putative FAD linked oxidase, at 648,677 to 650,101
_c06340
PGA1_c06350: PGA1_c06350 - putative MFS-type transporter, at 650,127 to 651,347
_c06350
PGA1_c06360: PGA1_c06360 - Secreted and surface protein containing fasciclin-like repeats, at 651,589 to 652,065
_c06360
PGA1_c06370: PGA1_c06370 - adenine phosphoribosyltransferase Apt, at 652,285 to 652,824
_c06370
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 650.134 kb on + strand at 650.264 kb on - strand, within PGA1_c06350 at 650.277 kb on + strand, within PGA1_c06350 at 650.366 kb on + strand, within PGA1_c06350 at 650.374 kb on - strand, within PGA1_c06350 at 650.381 kb on - strand, within PGA1_c06350 at 650.428 kb on - strand, within PGA1_c06350 at 650.460 kb on - strand, within PGA1_c06350 at 650.462 kb on + strand, within PGA1_c06350 at 650.485 kb on - strand, within PGA1_c06350 at 650.579 kb on + strand, within PGA1_c06350 at 650.604 kb on + strand, within PGA1_c06350 at 650.718 kb on - strand, within PGA1_c06350 at 650.749 kb on + strand, within PGA1_c06350 at 650.794 kb on - strand, within PGA1_c06350 at 650.835 kb on + strand, within PGA1_c06350 at 650.843 kb on - strand, within PGA1_c06350 at 650.923 kb on + strand, within PGA1_c06350 at 650.938 kb on + strand, within PGA1_c06350 at 651.084 kb on + strand, within PGA1_c06350 at 651.097 kb on - strand, within PGA1_c06350 at 651.153 kb on + strand, within PGA1_c06350 at 651.158 kb on + strand, within PGA1_c06350 at 651.178 kb on + strand, within PGA1_c06350 at 651.189 kb on - strand, within PGA1_c06350 at 651.216 kb on + strand, within PGA1_c06350 at 651.402 kb on - strand at 651.412 kb on - strand at 651.482 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.537 kb on + strand at 651.545 kb on + strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.545 kb on - strand at 651.636 kb on - strand at 651.685 kb on + strand, within PGA1_c06360 at 651.693 kb on - strand, within PGA1_c06360 at 651.693 kb on - strand, within PGA1_c06360 at 651.698 kb on - strand, within PGA1_c06360 at 651.709 kb on + strand, within PGA1_c06360 at 651.719 kb on - strand, within PGA1_c06360 at 651.763 kb on + strand, within PGA1_c06360 at 651.771 kb on - strand, within PGA1_c06360 at 651.868 kb on + strand, within PGA1_c06360 at 651.899 kb on + strand, within PGA1_c06360 at 651.907 kb on - strand, within PGA1_c06360 at 651.908 kb on - strand, within PGA1_c06360 at 651.923 kb on + strand, within PGA1_c06360 at 651.926 kb on - strand, within PGA1_c06360 at 651.926 kb on - strand, within PGA1_c06360 at 651.993 kb on - strand, within PGA1_c06360 at 652.042 kb on + strand at 652.042 kb on + strand at 652.050 kb on - strand at 652.068 kb on + strand at 652.080 kb on + strand at 652.088 kb on - strand at 652.101 kb on - strand at 652.113 kb on + strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.121 kb on - strand at 652.300 kb on - strand at 652.306 kb on - strand at 652.317 kb on + strand at 652.341 kb on - strand, within PGA1_c06370
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 650,134 + -1.4 650,264 - PGA1_c06350 0.11 -0.7 650,277 + PGA1_c06350 0.12 -0.5 650,366 + PGA1_c06350 0.20 -0.6 650,374 - PGA1_c06350 0.20 -0.0 650,381 - PGA1_c06350 0.21 +1.1 650,428 - PGA1_c06350 0.25 -0.6 650,460 - PGA1_c06350 0.27 +0.3 650,462 + PGA1_c06350 0.27 +1.0 650,485 - PGA1_c06350 0.29 -2.9 650,579 + PGA1_c06350 0.37 +0.2 650,604 + PGA1_c06350 0.39 +0.2 650,718 - PGA1_c06350 0.48 +0.5 650,749 + PGA1_c06350 0.51 -0.3 650,794 - PGA1_c06350 0.55 -1.0 650,835 + PGA1_c06350 0.58 -2.3 650,843 - PGA1_c06350 0.59 -0.4 650,923 + PGA1_c06350 0.65 -0.9 650,938 + PGA1_c06350 0.66 -1.4 651,084 + PGA1_c06350 0.78 +1.2 651,097 - PGA1_c06350 0.79 -0.3 651,153 + PGA1_c06350 0.84 -2.2 651,158 + PGA1_c06350 0.84 -0.3 651,178 + PGA1_c06350 0.86 +1.4 651,189 - PGA1_c06350 0.87 +1.0 651,216 + PGA1_c06350 0.89 +0.7 651,402 - +0.4 651,412 - -3.0 651,482 + -1.7 651,537 + +1.4 651,537 + -0.4 651,537 + +0.7 651,537 + -0.1 651,537 + -1.4 651,537 + +0.8 651,545 + -2.5 651,545 - -1.2 651,545 - -2.4 651,545 - -0.7 651,545 - -2.5 651,545 - +1.4 651,545 - -0.2 651,545 - -0.2 651,636 - -2.0 651,685 + PGA1_c06360 0.20 -1.6 651,693 - PGA1_c06360 0.22 -0.3 651,693 - PGA1_c06360 0.22 +1.8 651,698 - PGA1_c06360 0.23 -2.7 651,709 + PGA1_c06360 0.25 -1.4 651,719 - PGA1_c06360 0.27 -0.1 651,763 + PGA1_c06360 0.36 -0.2 651,771 - PGA1_c06360 0.38 -1.4 651,868 + PGA1_c06360 0.58 +0.8 651,899 + PGA1_c06360 0.65 -1.7 651,907 - PGA1_c06360 0.67 +0.5 651,908 - PGA1_c06360 0.67 -0.0 651,923 + PGA1_c06360 0.70 +0.9 651,926 - PGA1_c06360 0.71 +1.4 651,926 - PGA1_c06360 0.71 +0.9 651,993 - PGA1_c06360 0.85 +0.4 652,042 + +0.6 652,042 + -0.0 652,050 - +0.2 652,068 + +1.9 652,080 + -3.2 652,088 - +1.4 652,101 - -0.9 652,113 + +1.2 652,121 - +0.7 652,121 - +1.1 652,121 - -1.1 652,300 - -2.3 652,306 - +1.7 652,317 + +1.9 652,341 - PGA1_c06370 0.10 -2.3
Or see this region's nucleotide sequence