Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_520 and HP15_521 are separated by 66 nucleotides HP15_521 and HP15_522 are separated by 6 nucleotides HP15_522 and HP15_523 are separated by 95 nucleotides
HP15_520: HP15_520 - type IV pilus biogenesis protein, at 531,968 to 535,465
_520
HP15_521: HP15_521 - fimbrial protein pilin, at 535,532 to 535,894
_521
HP15_522: HP15_522 - type IV pilus biogenesis protein-like protein, at 535,901 to 536,458
_522
HP15_523: HP15_523 - two component, sigma54 specific, transcriptional regulator, Fis family, at 536,554 to 537,942
_523
Position (kb) 535
536 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 534.549 kb on - strand, within HP15_520 at 534.574 kb on + strand, within HP15_520 at 534.735 kb on - strand, within HP15_520 at 534.900 kb on - strand, within HP15_520 at 534.911 kb on + strand, within HP15_520 at 534.967 kb on + strand, within HP15_520 at 534.975 kb on - strand, within HP15_520 at 534.993 kb on + strand, within HP15_520 at 534.993 kb on + strand, within HP15_520 at 535.101 kb on + strand, within HP15_520 at 535.191 kb on + strand at 535.199 kb on - strand at 535.199 kb on - strand at 535.315 kb on + strand at 535.323 kb on - strand at 535.392 kb on - strand at 535.641 kb on - strand, within HP15_521 at 535.857 kb on - strand, within HP15_521 at 535.974 kb on - strand, within HP15_522 at 536.209 kb on - strand, within HP15_522 at 536.317 kb on - strand, within HP15_522 at 536.541 kb on + strand at 536.834 kb on - strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.841 kb on + strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.849 kb on - strand, within HP15_523 at 536.851 kb on - strand, within HP15_523
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 534,549 - HP15_520 0.74 +3.4 534,574 + HP15_520 0.74 -0.6 534,735 - HP15_520 0.79 -0.2 534,900 - HP15_520 0.84 -2.4 534,911 + HP15_520 0.84 -0.7 534,967 + HP15_520 0.86 +0.2 534,975 - HP15_520 0.86 -0.1 534,993 + HP15_520 0.86 -0.5 534,993 + HP15_520 0.86 -1.0 535,101 + HP15_520 0.90 -0.9 535,191 + -2.0 535,199 - -1.8 535,199 - +0.3 535,315 + -0.8 535,323 - -1.0 535,392 - +2.3 535,641 - HP15_521 0.30 -2.1 535,857 - HP15_521 0.90 +0.0 535,974 - HP15_522 0.13 -1.1 536,209 - HP15_522 0.55 +2.3 536,317 - HP15_522 0.75 +0.7 536,541 + +0.7 536,834 - HP15_523 0.20 +1.1 536,841 + HP15_523 0.21 +0.2 536,841 + HP15_523 0.21 +3.2 536,841 + HP15_523 0.21 -1.7 536,849 - HP15_523 0.21 +0.3 536,849 - HP15_523 0.21 -0.6 536,849 - HP15_523 0.21 -0.7 536,851 - HP15_523 0.21 -0.4
Or see this region's nucleotide sequence