Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0534

Experiment: nitrite (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0532 and Psest_0533 are separated by 97 nucleotidesPsest_0533 and Psest_0534 are separated by 117 nucleotidesPsest_0534 and Psest_0535 are separated by 8 nucleotides Psest_0532: Psest_0532 - tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB, at 585,288 to 586,601 _0532 Psest_0533: Psest_0533 - Sel1 repeat., at 586,699 to 587,235 _0533 Psest_0534: Psest_0534 - hypothetical protein, at 587,353 to 587,976 _0534 Psest_0535: Psest_0535 - glutamate-1-semialdehyde-2,1-aminomutase, at 587,985 to 589,268 _0535 Position (kb) 587 588Strain fitness (log2 ratio) -2 -1 0 1 2at 586.460 kb on + strand, within Psest_0532at 586.461 kb on - strand, within Psest_0532at 586.641 kb on + strandat 586.641 kb on + strandat 586.641 kb on + strandat 586.641 kb on + strandat 586.641 kb on + strandat 586.642 kb on - strandat 586.642 kb on - strandat 586.642 kb on - strandat 586.642 kb on - strandat 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.875 kb on - strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.979 kb on + strand, within Psest_0533at 586.980 kb on - strand, within Psest_0533at 587.021 kb on + strand, within Psest_0533at 587.043 kb on - strand, within Psest_0533at 587.299 kb on + strandat 587.300 kb on - strandat 587.321 kb on + strandat 587.321 kb on + strandat 587.321 kb on + strandat 587.321 kb on + strandat 587.321 kb on + strandat 587.321 kb on + strandat 587.322 kb on - strandat 587.322 kb on - strandat 587.354 kb on + strandat 587.355 kb on - strandat 587.573 kb on + strand, within Psest_0534at 587.573 kb on + strand, within Psest_0534at 587.573 kb on + strand, within Psest_0534at 587.573 kb on + strand, within Psest_0534at 587.573 kb on + strand, within Psest_0534at 587.574 kb on - strand, within Psest_0534at 587.616 kb on - strand, within Psest_0534

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
remove
586,460 + Psest_0532 0.89 -2.0
586,461 - Psest_0532 0.89 -0.5
586,641 + -1.2
586,641 + -2.3
586,641 + -0.9
586,641 + -1.7
586,641 + +0.3
586,642 - -0.8
586,642 - -1.0
586,642 - -0.3
586,642 - +2.1
586,875 - Psest_0533 0.33 -1.0
586,875 - Psest_0533 0.33 +2.1
586,875 - Psest_0533 0.33 -0.0
586,875 - Psest_0533 0.33 -0.4
586,875 - Psest_0533 0.33 -1.0
586,875 - Psest_0533 0.33 +1.0
586,875 - Psest_0533 0.33 +0.2
586,875 - Psest_0533 0.33 +1.6
586,875 - Psest_0533 0.33 -0.9
586,875 - Psest_0533 0.33 -1.0
586,875 - Psest_0533 0.33 -1.9
586,875 - Psest_0533 0.33 -0.5
586,979 + Psest_0533 0.52 +1.1
586,979 + Psest_0533 0.52 +1.1
586,979 + Psest_0533 0.52 +0.1
586,979 + Psest_0533 0.52 +0.1
586,979 + Psest_0533 0.52 +1.1
586,979 + Psest_0533 0.52 -0.5
586,979 + Psest_0533 0.52 -0.2
586,980 - Psest_0533 0.52 -0.1
587,021 + Psest_0533 0.60 -1.9
587,043 - Psest_0533 0.64 +0.4
587,299 + -0.3
587,300 - -0.2
587,321 + +1.1
587,321 + +0.8
587,321 + +2.1
587,321 + -0.6
587,321 + +1.1
587,321 + +2.7
587,322 - +0.3
587,322 - +0.5
587,354 + +1.1
587,355 - -0.6
587,573 + Psest_0534 0.35 +0.4
587,573 + Psest_0534 0.35 +0.7
587,573 + Psest_0534 0.35 +0.5
587,573 + Psest_0534 0.35 -1.9
587,573 + Psest_0534 0.35 +0.5
587,574 - Psest_0534 0.35 +2.0
587,616 - Psest_0534 0.42 -1.0

Or see this region's nucleotide sequence