Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_498 and HP15_499 are separated by 138 nucleotides HP15_499 and HP15_500 are separated by 110 nucleotides HP15_500 and HP15_501 are separated by 33 nucleotides HP15_501 and HP15_502 are separated by 59 nucleotides
HP15_498: HP15_498 - thiolase-like protein, at 511,896 to 512,099
_498
HP15_499: HP15_499 - hypothetical protein, at 512,238 to 512,348
_499
HP15_500: HP15_500 - conserved hypothetical protein, at 512,459 to 513,064
_500
HP15_501: HP15_501 - acyltransferase, WS/DGAT/MGAT, at 513,098 to 514,684
_501
HP15_502: HP15_502 - transcriptional regulator, LysR family protein, at 514,744 to 515,655
_502
Position (kb) 513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.113 kb on - strand at 512.376 kb on + strand at 512.455 kb on - strand at 512.551 kb on + strand, within HP15_500 at 512.551 kb on - strand, within HP15_500 at 512.635 kb on - strand, within HP15_500 at 512.785 kb on - strand, within HP15_500 at 512.985 kb on + strand, within HP15_500 at 512.985 kb on + strand, within HP15_500 at 513.003 kb on - strand, within HP15_500 at 513.073 kb on - strand at 513.167 kb on + strand at 513.167 kb on + strand at 513.172 kb on + strand at 513.180 kb on - strand at 513.218 kb on - strand at 513.363 kb on + strand, within HP15_501 at 513.363 kb on - strand, within HP15_501 at 513.400 kb on + strand, within HP15_501 at 513.400 kb on + strand, within HP15_501 at 513.433 kb on - strand, within HP15_501 at 513.479 kb on - strand, within HP15_501 at 513.525 kb on - strand, within HP15_501 at 513.528 kb on + strand, within HP15_501 at 513.528 kb on + strand, within HP15_501 at 513.581 kb on + strand, within HP15_501 at 513.586 kb on + strand, within HP15_501 at 513.588 kb on - strand, within HP15_501 at 513.802 kb on - strand, within HP15_501 at 514.060 kb on - strand, within HP15_501 at 514.300 kb on - strand, within HP15_501 at 514.347 kb on - strand, within HP15_501 at 514.791 kb on - strand at 514.808 kb on + strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.816 kb on - strand at 514.979 kb on - strand, within HP15_502 at 515.212 kb on + strand, within HP15_502 at 515.358 kb on - strand, within HP15_502 at 515.375 kb on + strand, within HP15_502 at 515.383 kb on - strand, within HP15_502 at 515.433 kb on + strand, within HP15_502 at 515.473 kb on - strand, within HP15_502 at 515.540 kb on + strand, within HP15_502 at 515.548 kb on - strand, within HP15_502 at 515.631 kb on + strand at 515.639 kb on - strand at 515.639 kb on - strand at 515.678 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 512,113 - +1.3 512,376 + -0.4 512,455 - -1.2 512,551 + HP15_500 0.15 +0.1 512,551 - HP15_500 0.15 -1.7 512,635 - HP15_500 0.29 +1.2 512,785 - HP15_500 0.54 -1.8 512,985 + HP15_500 0.87 +1.2 512,985 + HP15_500 0.87 +1.3 513,003 - HP15_500 0.90 +1.3 513,073 - +1.3 513,167 + +0.2 513,167 + +0.3 513,172 + +2.2 513,180 - +0.7 513,218 - +1.5 513,363 + HP15_501 0.17 -0.8 513,363 - HP15_501 0.17 -0.2 513,400 + HP15_501 0.19 -1.8 513,400 + HP15_501 0.19 -1.0 513,433 - HP15_501 0.21 -1.3 513,479 - HP15_501 0.24 -2.1 513,525 - HP15_501 0.27 -2.1 513,528 + HP15_501 0.27 -1.5 513,528 + HP15_501 0.27 +2.6 513,581 + HP15_501 0.30 -1.3 513,586 + HP15_501 0.31 -0.6 513,588 - HP15_501 0.31 -0.0 513,802 - HP15_501 0.44 -0.9 514,060 - HP15_501 0.61 +0.3 514,300 - HP15_501 0.76 -1.7 514,347 - HP15_501 0.79 +0.9 514,791 - +1.5 514,808 + -0.5 514,816 - +1.3 514,816 - +1.0 514,816 - -2.9 514,816 - -0.1 514,979 - HP15_502 0.26 +1.3 515,212 + HP15_502 0.51 -1.4 515,358 - HP15_502 0.67 -0.1 515,375 + HP15_502 0.69 -0.5 515,383 - HP15_502 0.70 -1.5 515,433 + HP15_502 0.76 -0.5 515,473 - HP15_502 0.80 -0.1 515,540 + HP15_502 0.87 -2.0 515,548 - HP15_502 0.88 -2.8 515,631 + -3.1 515,639 - -0.1 515,639 - -1.2 515,678 + -0.0
Or see this region's nucleotide sequence