Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_50 and HP15_51 are separated by 657 nucleotides HP15_51 and HP15_52 are separated by 388 nucleotides
HP15_50: HP15_50 - hypothetical protein, at 54,201 to 54,554
_50
HP15_51: HP15_51 - cytochrome P450, at 55,212 to 56,486
_51
HP15_52: HP15_52 - amidohydrolase 2, at 56,875 to 58,182
_52
Position (kb) 55
56
57 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 54.215 kb on - strand at 54.257 kb on - strand, within HP15_50 at 54.292 kb on - strand, within HP15_50 at 54.332 kb on + strand, within HP15_50 at 54.332 kb on + strand, within HP15_50 at 54.341 kb on - strand, within HP15_50 at 54.464 kb on + strand, within HP15_50 at 54.500 kb on - strand, within HP15_50 at 54.545 kb on + strand at 54.553 kb on - strand at 54.553 kb on - strand at 54.558 kb on + strand at 54.566 kb on - strand at 54.580 kb on + strand at 54.580 kb on + strand at 54.635 kb on + strand at 54.635 kb on + strand at 54.643 kb on - strand at 54.644 kb on - strand at 54.649 kb on - strand at 54.697 kb on - strand at 54.697 kb on - strand at 54.740 kb on - strand at 54.741 kb on + strand at 54.772 kb on + strand at 54.811 kb on + strand at 54.824 kb on - strand at 54.834 kb on - strand at 54.851 kb on + strand at 54.857 kb on + strand at 54.879 kb on + strand at 54.879 kb on + strand at 54.879 kb on + strand at 54.884 kb on + strand at 54.884 kb on + strand at 54.887 kb on - strand at 54.887 kb on - strand at 54.892 kb on - strand at 54.892 kb on - strand at 54.892 kb on - strand at 54.896 kb on + strand at 54.899 kb on - strand at 54.899 kb on - strand at 54.904 kb on - strand at 54.904 kb on - strand at 54.904 kb on - strand at 54.915 kb on - strand at 55.052 kb on + strand at 55.073 kb on - strand at 55.276 kb on - strand at 55.313 kb on - strand at 55.405 kb on - strand, within HP15_51 at 55.409 kb on + strand, within HP15_51 at 55.417 kb on - strand, within HP15_51 at 55.417 kb on - strand, within HP15_51 at 55.509 kb on - strand, within HP15_51 at 55.525 kb on + strand, within HP15_51 at 55.579 kb on + strand, within HP15_51 at 55.727 kb on + strand, within HP15_51 at 55.727 kb on + strand, within HP15_51 at 55.727 kb on + strand, within HP15_51 at 55.727 kb on + strand, within HP15_51 at 55.735 kb on - strand, within HP15_51 at 55.735 kb on - strand, within HP15_51 at 55.798 kb on - strand, within HP15_51 at 55.847 kb on + strand, within HP15_51 at 55.850 kb on + strand, within HP15_51 at 55.858 kb on - strand, within HP15_51 at 55.858 kb on - strand, within HP15_51 at 56.056 kb on - strand, within HP15_51 at 56.056 kb on - strand, within HP15_51 at 56.084 kb on + strand, within HP15_51 at 56.084 kb on + strand, within HP15_51 at 56.092 kb on - strand, within HP15_51 at 56.163 kb on + strand, within HP15_51 at 56.171 kb on - strand, within HP15_51 at 56.171 kb on - strand, within HP15_51 at 56.185 kb on + strand, within HP15_51 at 56.185 kb on + strand, within HP15_51 at 56.185 kb on + strand, within HP15_51 at 56.185 kb on + strand, within HP15_51 at 56.306 kb on - strand, within HP15_51 at 56.306 kb on - strand, within HP15_51 at 56.379 kb on + strand at 56.379 kb on + strand at 56.379 kb on + strand at 56.379 kb on + strand at 56.387 kb on - strand at 56.387 kb on - strand at 56.387 kb on - strand at 56.414 kb on + strand at 56.421 kb on - strand at 56.440 kb on - strand at 56.445 kb on + strand at 56.453 kb on - strand at 56.454 kb on + strand at 56.455 kb on - strand at 56.557 kb on + strand at 56.663 kb on + strand at 56.681 kb on - strand at 56.698 kb on + strand at 56.706 kb on - strand at 56.712 kb on + strand at 56.732 kb on - strand at 56.936 kb on - strand at 56.944 kb on - strand at 56.961 kb on + strand at 57.022 kb on + strand, within HP15_52 at 57.063 kb on - strand, within HP15_52 at 57.074 kb on - strand, within HP15_52 at 57.084 kb on - strand, within HP15_52 at 57.184 kb on + strand, within HP15_52 at 57.299 kb on - strand, within HP15_52 at 57.351 kb on - strand, within HP15_52 at 57.383 kb on + strand, within HP15_52 at 57.476 kb on + strand, within HP15_52 at 57.486 kb on + strand, within HP15_52
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 54,215 - -3.0 54,257 - HP15_50 0.16 -0.7 54,292 - HP15_50 0.26 +0.1 54,332 + HP15_50 0.37 -0.9 54,332 + HP15_50 0.37 -3.1 54,341 - HP15_50 0.40 -2.4 54,464 + HP15_50 0.74 -0.3 54,500 - HP15_50 0.84 +0.1 54,545 + -1.3 54,553 - -2.4 54,553 - -0.5 54,558 + +0.1 54,566 - +1.3 54,580 + +0.3 54,580 + -0.5 54,635 + -0.8 54,635 + -1.2 54,643 - +0.6 54,644 - -1.8 54,649 - -1.3 54,697 - -1.9 54,697 - -0.3 54,740 - +1.3 54,741 + +1.3 54,772 + -0.1 54,811 + -2.5 54,824 - +1.0 54,834 - -1.2 54,851 + -2.1 54,857 + -0.7 54,879 + +0.3 54,879 + -3.4 54,879 + -0.9 54,884 + +1.0 54,884 + +0.1 54,887 - -2.0 54,887 - +0.8 54,892 - -0.5 54,892 - +1.3 54,892 - -1.5 54,896 + -2.5 54,899 - -1.7 54,899 - +1.3 54,904 - -1.8 54,904 - -1.0 54,904 - -2.6 54,915 - -0.8 55,052 + +0.3 55,073 - -0.7 55,276 - +1.3 55,313 - -1.7 55,405 - HP15_51 0.15 -0.1 55,409 + HP15_51 0.15 +1.7 55,417 - HP15_51 0.16 -1.3 55,417 - HP15_51 0.16 -0.8 55,509 - HP15_51 0.23 -0.3 55,525 + HP15_51 0.25 +0.3 55,579 + HP15_51 0.29 +1.0 55,727 + HP15_51 0.40 -0.3 55,727 + HP15_51 0.40 -1.3 55,727 + HP15_51 0.40 +1.8 55,727 + HP15_51 0.40 -0.5 55,735 - HP15_51 0.41 -1.5 55,735 - HP15_51 0.41 +2.2 55,798 - HP15_51 0.46 +0.7 55,847 + HP15_51 0.50 -2.0 55,850 + HP15_51 0.50 +0.3 55,858 - HP15_51 0.51 +0.5 55,858 - HP15_51 0.51 +0.1 56,056 - HP15_51 0.66 +5.9 56,056 - HP15_51 0.66 +0.5 56,084 + HP15_51 0.68 -1.0 56,084 + HP15_51 0.68 +1.3 56,092 - HP15_51 0.69 -1.2 56,163 + HP15_51 0.75 +0.7 56,171 - HP15_51 0.75 -1.5 56,171 - HP15_51 0.75 -0.9 56,185 + HP15_51 0.76 +1.3 56,185 + HP15_51 0.76 +1.5 56,185 + HP15_51 0.76 -0.4 56,185 + HP15_51 0.76 -1.4 56,306 - HP15_51 0.86 -3.6 56,306 - HP15_51 0.86 -1.1 56,379 + +2.0 56,379 + -1.5 56,379 + -1.1 56,379 + -2.3 56,387 - +1.7 56,387 - -1.2 56,387 - +0.6 56,414 + +4.3 56,421 - +1.1 56,440 - -0.4 56,445 + -0.3 56,453 - -0.6 56,454 + -1.3 56,455 - +0.8 56,557 + +1.3 56,663 + -0.9 56,681 - -0.1 56,698 + -0.3 56,706 - +0.8 56,712 + -1.0 56,732 - -1.5 56,936 - -3.8 56,944 - +0.3 56,961 + +0.7 57,022 + HP15_52 0.11 -0.0 57,063 - HP15_52 0.14 -0.1 57,074 - HP15_52 0.15 -0.1 57,084 - HP15_52 0.16 +0.3 57,184 + HP15_52 0.24 +0.1 57,299 - HP15_52 0.32 -2.0 57,351 - HP15_52 0.36 +1.8 57,383 + HP15_52 0.39 +0.4 57,476 + HP15_52 0.46 -0.0 57,486 + HP15_52 0.47 +1.4
Or see this region's nucleotide sequence