Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_488 and HP15_490 are separated by 98 nucleotides HP15_490 and HP15_489 are separated by 15 nucleotides HP15_489 and HP15_491 are separated by 77 nucleotides HP15_491 and HP15_492 overlap by 4 nucleotides
HP15_488: HP15_488 - ABC transporter ATP-binding protein-like protein, at 503,193 to 504,854
_488
HP15_490: HP15_490 - hypothetical protein, at 504,953 to 505,237
_490
HP15_489: HP15_489 - glycine hydroxymethyltransferase, at 505,253 to 506,506
_489
HP15_491: HP15_491 - transcriptional repressor NrdR, at 506,584 to 507,102
_491
HP15_492: HP15_492 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase, at 507,099 to 508,214
_492
Position (kb) 505
506
507 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 504.308 kb on + strand, within HP15_488 at 504.333 kb on + strand, within HP15_488 at 504.333 kb on + strand, within HP15_488 at 504.346 kb on - strand, within HP15_488 at 504.346 kb on - strand, within HP15_488 at 504.369 kb on - strand, within HP15_488 at 504.543 kb on - strand, within HP15_488 at 504.703 kb on + strand at 504.713 kb on + strand at 504.835 kb on + strand at 504.843 kb on - strand at 504.913 kb on + strand at 504.921 kb on - strand at 504.944 kb on - strand at 504.997 kb on + strand, within HP15_490 at 505.005 kb on - strand, within HP15_490 at 505.005 kb on - strand, within HP15_490 at 505.019 kb on + strand, within HP15_490 at 505.027 kb on + strand, within HP15_490 at 505.042 kb on + strand, within HP15_490 at 505.050 kb on - strand, within HP15_490 at 505.100 kb on + strand, within HP15_490 at 505.143 kb on - strand, within HP15_490 at 506.916 kb on + strand, within HP15_491
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 504,308 + HP15_488 0.67 +0.5 504,333 + HP15_488 0.69 -4.3 504,333 + HP15_488 0.69 -0.2 504,346 - HP15_488 0.69 -1.3 504,346 - HP15_488 0.69 -0.4 504,369 - HP15_488 0.71 -2.7 504,543 - HP15_488 0.81 -0.6 504,703 + -0.9 504,713 + +1.4 504,835 + -0.2 504,843 - -2.3 504,913 + -1.8 504,921 - -1.0 504,944 - -2.3 504,997 + HP15_490 0.15 +1.4 505,005 - HP15_490 0.18 -2.0 505,005 - HP15_490 0.18 +1.2 505,019 + HP15_490 0.23 -2.3 505,027 + HP15_490 0.26 +0.0 505,042 + HP15_490 0.31 -1.7 505,050 - HP15_490 0.34 -0.2 505,100 + HP15_490 0.52 +3.2 505,143 - HP15_490 0.67 +3.8 506,916 + HP15_491 0.64 +1.0
Or see this region's nucleotide sequence