Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0489 and Psest_0490 are separated by 108 nucleotides Psest_0490 and Psest_0491 are separated by 139 nucleotides
Psest_0489: Psest_0489 - phosphoserine phosphatase SerB, at 540,964 to 542,178
_0489
Psest_0490: Psest_0490 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 542,287 to 543,360
_0490
Psest_0491: Psest_0491 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 543,500 to 545,566
_0491
Position (kb) 542
543
544 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 541.327 kb on + strand, within Psest_0489 at 541.348 kb on - strand, within Psest_0489 at 541.545 kb on - strand, within Psest_0489 at 541.766 kb on + strand, within Psest_0489 at 541.767 kb on - strand, within Psest_0489 at 541.767 kb on - strand, within Psest_0489 at 541.767 kb on - strand, within Psest_0489 at 541.828 kb on + strand, within Psest_0489 at 541.868 kb on - strand, within Psest_0489 at 542.012 kb on + strand, within Psest_0489 at 542.140 kb on + strand at 542.176 kb on + strand at 542.176 kb on + strand at 542.176 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.252 kb on + strand at 542.253 kb on - strand at 542.253 kb on - strand at 542.253 kb on - strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.369 kb on + strand at 542.370 kb on - strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.373 kb on + strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.374 kb on - strand at 542.437 kb on - strand, within Psest_0490 at 542.531 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.665 kb on + strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.666 kb on - strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.966 kb on + strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 542.967 kb on - strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.077 kb on + strand, within Psest_0490 at 543.078 kb on - strand, within Psest_0490 at 543.331 kb on + strand at 543.400 kb on + strand at 543.401 kb on - strand at 543.501 kb on + strand at 543.501 kb on + strand at 543.502 kb on - strand at 543.502 kb on - strand at 543.502 kb on - strand at 543.556 kb on - strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.570 kb on + strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.571 kb on - strand at 543.714 kb on + strand, within Psest_0491 at 543.714 kb on + strand, within Psest_0491 at 543.760 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.293 kb on + strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491 at 544.294 kb on - strand, within Psest_0491
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 541,327 + Psest_0489 0.30 -0.9 541,348 - Psest_0489 0.32 -0.5 541,545 - Psest_0489 0.48 +1.7 541,766 + Psest_0489 0.66 -1.1 541,767 - Psest_0489 0.66 -1.2 541,767 - Psest_0489 0.66 -2.1 541,767 - Psest_0489 0.66 -1.7 541,828 + Psest_0489 0.71 -0.5 541,868 - Psest_0489 0.74 -0.5 542,012 + Psest_0489 0.86 -0.2 542,140 + -0.7 542,176 + +1.4 542,176 + +1.5 542,176 + -0.5 542,252 + -0.4 542,252 + +1.7 542,252 + -0.3 542,252 + -1.5 542,252 + -0.1 542,252 + -0.3 542,252 + -0.7 542,252 + -1.7 542,253 - +1.9 542,253 - +0.5 542,253 - +2.8 542,369 + +0.5 542,369 + +0.6 542,369 + +1.5 542,370 - +1.9 542,373 + +0.4 542,373 + +0.9 542,373 + +0.9 542,373 + +1.2 542,373 + -1.4 542,373 + -0.8 542,373 + +1.6 542,373 + +0.9 542,373 + +0.3 542,373 + +0.5 542,373 + +0.6 542,374 - +0.3 542,374 - +0.8 542,374 - +0.8 542,374 - -0.7 542,374 - -0.6 542,374 - +0.9 542,374 - +0.9 542,374 - -0.2 542,374 - +0.6 542,437 - Psest_0490 0.14 +1.2 542,531 + Psest_0490 0.23 +0.7 542,665 + Psest_0490 0.35 +0.4 542,665 + Psest_0490 0.35 -1.2 542,665 + Psest_0490 0.35 +0.4 542,666 - Psest_0490 0.35 +1.0 542,666 - Psest_0490 0.35 +2.1 542,666 - Psest_0490 0.35 +0.1 542,666 - Psest_0490 0.35 +1.0 542,666 - Psest_0490 0.35 +1.9 542,666 - Psest_0490 0.35 +2.6 542,966 + Psest_0490 0.63 -0.4 542,966 + Psest_0490 0.63 +0.9 542,967 - Psest_0490 0.63 +0.6 542,967 - Psest_0490 0.63 +0.8 542,967 - Psest_0490 0.63 +0.8 542,967 - Psest_0490 0.63 +0.6 542,967 - Psest_0490 0.63 +1.6 543,077 + Psest_0490 0.74 +1.0 543,077 + Psest_0490 0.74 +0.1 543,078 - Psest_0490 0.74 +0.9 543,331 + -0.4 543,400 + -1.6 543,401 - -0.5 543,501 + +0.2 543,501 + -0.6 543,502 - +1.1 543,502 - -0.4 543,502 - +0.4 543,556 - +0.5 543,570 + -2.0 543,570 + +0.1 543,570 + -0.7 543,570 + -0.2 543,571 - -0.5 543,571 - +1.3 543,571 - -0.8 543,571 - -1.0 543,571 - -2.3 543,571 - -0.7 543,714 + Psest_0491 0.10 -0.5 543,714 + Psest_0491 0.10 +0.5 543,760 + Psest_0491 0.13 -0.9 544,293 + Psest_0491 0.38 -0.4 544,293 + Psest_0491 0.38 +0.5 544,293 + Psest_0491 0.38 +0.1 544,293 + Psest_0491 0.38 +0.0 544,294 - Psest_0491 0.38 -1.0 544,294 - Psest_0491 0.38 -1.5 544,294 - Psest_0491 0.38 -1.4 544,294 - Psest_0491 0.38 -0.5
Or see this region's nucleotide sequence