Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g44

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g43 and HP15_p187g44 are separated by 26 nucleotidesHP15_p187g44 and HP15_p187g45 are separated by 3 nucleotidesHP15_p187g45 and HP15_p187g46 are separated by 11 nucleotides HP15_p187g43: HP15_p187g43 - conserved hypothetical protein, at 35,835 to 37,220 _p187g43 HP15_p187g44: HP15_p187g44 - polysaccharide biosynthesis/export protein, at 37,247 to 38,368 _p187g44 HP15_p187g45: HP15_p187g45 - protein-tyrosine phosphatase, low molecular weight, at 38,372 to 38,806 _p187g45 HP15_p187g46: HP15_p187g46 - exopolysaccharide tyrosine-protein kinase, at 38,818 to 41,028 _p187g46 Position (kb) 37 38 39Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 36.309 kb on + strand, within HP15_p187g43at 36.309 kb on + strand, within HP15_p187g43at 36.384 kb on - strand, within HP15_p187g43at 36.500 kb on + strand, within HP15_p187g43at 36.508 kb on - strand, within HP15_p187g43at 36.508 kb on - strand, within HP15_p187g43at 36.533 kb on + strand, within HP15_p187g43at 36.561 kb on + strand, within HP15_p187g43at 36.574 kb on - strand, within HP15_p187g43at 36.587 kb on + strand, within HP15_p187g43at 36.641 kb on + strand, within HP15_p187g43at 36.643 kb on + strand, within HP15_p187g43at 36.651 kb on - strand, within HP15_p187g43at 36.651 kb on - strand, within HP15_p187g43at 36.659 kb on - strand, within HP15_p187g43at 36.672 kb on - strand, within HP15_p187g43at 36.672 kb on - strand, within HP15_p187g43at 36.691 kb on + strand, within HP15_p187g43at 36.724 kb on + strand, within HP15_p187g43at 36.753 kb on + strand, within HP15_p187g43at 36.769 kb on - strand, within HP15_p187g43at 36.787 kb on - strand, within HP15_p187g43at 36.836 kb on - strand, within HP15_p187g43at 36.871 kb on + strand, within HP15_p187g43at 36.879 kb on - strand, within HP15_p187g43at 36.879 kb on - strand, within HP15_p187g43at 36.925 kb on + strand, within HP15_p187g43at 36.933 kb on - strand, within HP15_p187g43at 36.969 kb on - strand, within HP15_p187g43at 36.969 kb on - strand, within HP15_p187g43at 36.969 kb on - strand, within HP15_p187g43at 36.995 kb on + strand, within HP15_p187g43at 36.995 kb on + strand, within HP15_p187g43at 37.002 kb on + strand, within HP15_p187g43at 37.003 kb on - strand, within HP15_p187g43at 37.069 kb on - strand, within HP15_p187g43at 37.107 kb on - strandat 37.120 kb on + strandat 37.199 kb on + strandat 37.207 kb on - strandat 37.231 kb on - strandat 37.242 kb on - strandat 37.285 kb on + strandat 37.286 kb on + strandat 37.293 kb on - strandat 37.313 kb on - strandat 37.342 kb on + strandat 37.388 kb on - strand, within HP15_p187g44at 37.435 kb on + strand, within HP15_p187g44at 37.468 kb on + strand, within HP15_p187g44at 37.503 kb on + strand, within HP15_p187g44at 37.539 kb on + strand, within HP15_p187g44at 37.583 kb on - strand, within HP15_p187g44at 37.595 kb on + strand, within HP15_p187g44at 37.596 kb on + strand, within HP15_p187g44at 37.603 kb on - strand, within HP15_p187g44at 37.624 kb on - strand, within HP15_p187g44at 37.624 kb on - strand, within HP15_p187g44at 37.775 kb on + strand, within HP15_p187g44at 37.811 kb on - strand, within HP15_p187g44at 37.875 kb on + strand, within HP15_p187g44at 37.944 kb on - strand, within HP15_p187g44at 37.948 kb on + strand, within HP15_p187g44at 37.959 kb on - strand, within HP15_p187g44at 37.995 kb on - strand, within HP15_p187g44at 38.063 kb on + strand, within HP15_p187g44at 38.063 kb on + strand, within HP15_p187g44at 38.063 kb on + strand, within HP15_p187g44at 38.071 kb on - strand, within HP15_p187g44at 38.072 kb on - strand, within HP15_p187g44at 38.074 kb on + strand, within HP15_p187g44at 38.085 kb on + strand, within HP15_p187g44at 38.093 kb on - strand, within HP15_p187g44at 38.130 kb on + strand, within HP15_p187g44at 38.138 kb on + strand, within HP15_p187g44at 38.181 kb on - strand, within HP15_p187g44at 38.202 kb on - strand, within HP15_p187g44at 38.260 kb on - strandat 38.327 kb on + strandat 38.332 kb on + strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.340 kb on - strandat 38.370 kb on - strandat 38.372 kb on - strandat 38.486 kb on - strand, within HP15_p187g45at 38.487 kb on - strand, within HP15_p187g45at 38.517 kb on + strand, within HP15_p187g45at 38.535 kb on - strand, within HP15_p187g45at 38.535 kb on - strand, within HP15_p187g45at 38.549 kb on - strand, within HP15_p187g45at 38.600 kb on + strand, within HP15_p187g45at 38.634 kb on + strand, within HP15_p187g45at 38.647 kb on + strand, within HP15_p187g45at 38.665 kb on - strand, within HP15_p187g45at 38.712 kb on + strand, within HP15_p187g45at 38.712 kb on + strand, within HP15_p187g45at 38.720 kb on - strand, within HP15_p187g45at 38.720 kb on - strand, within HP15_p187g45at 38.782 kb on + strandat 38.785 kb on - strandat 38.791 kb on + strandat 38.906 kb on - strandat 38.923 kb on - strandat 38.933 kb on + strandat 38.945 kb on + strandat 38.945 kb on - strandat 38.973 kb on + strandat 39.003 kb on + strandat 39.003 kb on + strandat 39.011 kb on - strandat 39.011 kb on - strandat 39.040 kb on + strand, within HP15_p187g46at 39.073 kb on + strand, within HP15_p187g46at 39.079 kb on - strand, within HP15_p187g46at 39.141 kb on - strand, within HP15_p187g46at 39.143 kb on + strand, within HP15_p187g46at 39.150 kb on + strand, within HP15_p187g46at 39.151 kb on - strand, within HP15_p187g46at 39.151 kb on - strand, within HP15_p187g46at 39.158 kb on - strand, within HP15_p187g46at 39.179 kb on + strand, within HP15_p187g46at 39.236 kb on + strand, within HP15_p187g46at 39.238 kb on + strand, within HP15_p187g46at 39.244 kb on - strand, within HP15_p187g46at 39.294 kb on + strand, within HP15_p187g46

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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36,309 + HP15_p187g43 0.34 -0.1
36,309 + HP15_p187g43 0.34 -0.8
36,384 - HP15_p187g43 0.40 -0.1
36,500 + HP15_p187g43 0.48 -0.5
36,508 - HP15_p187g43 0.49 +1.7
36,508 - HP15_p187g43 0.49 -0.6
36,533 + HP15_p187g43 0.50 -4.3
36,561 + HP15_p187g43 0.52 -0.0
36,574 - HP15_p187g43 0.53 -0.2
36,587 + HP15_p187g43 0.54 +1.3
36,641 + HP15_p187g43 0.58 -1.0
36,643 + HP15_p187g43 0.58 -0.2
36,651 - HP15_p187g43 0.59 -0.4
36,651 - HP15_p187g43 0.59 +0.9
36,659 - HP15_p187g43 0.59 -1.1
36,672 - HP15_p187g43 0.60 -0.7
36,672 - HP15_p187g43 0.60 -0.6
36,691 + HP15_p187g43 0.62 -1.9
36,724 + HP15_p187g43 0.64 -0.3
36,753 + HP15_p187g43 0.66 +0.1
36,769 - HP15_p187g43 0.67 -1.2
36,787 - HP15_p187g43 0.69 +0.5
36,836 - HP15_p187g43 0.72 -0.1
36,871 + HP15_p187g43 0.75 +1.1
36,879 - HP15_p187g43 0.75 -0.1
36,879 - HP15_p187g43 0.75 -0.8
36,925 + HP15_p187g43 0.79 +0.4
36,933 - HP15_p187g43 0.79 -1.1
36,969 - HP15_p187g43 0.82 -1.3
36,969 - HP15_p187g43 0.82 +0.1
36,969 - HP15_p187g43 0.82 -0.9
36,995 + HP15_p187g43 0.84 -0.9
36,995 + HP15_p187g43 0.84 -1.8
37,002 + HP15_p187g43 0.84 +0.1
37,003 - HP15_p187g43 0.84 -0.0
37,069 - HP15_p187g43 0.89 +0.1
37,107 - -1.2
37,120 + -0.8
37,199 + -0.7
37,207 - +0.6
37,231 - +0.4
37,242 - +0.0
37,285 + -0.6
37,286 + -3.8
37,293 - -0.6
37,313 - +0.7
37,342 + -1.5
37,388 - HP15_p187g44 0.13 +1.0
37,435 + HP15_p187g44 0.17 +0.2
37,468 + HP15_p187g44 0.20 +1.3
37,503 + HP15_p187g44 0.23 -0.1
37,539 + HP15_p187g44 0.26 -1.1
37,583 - HP15_p187g44 0.30 +0.3
37,595 + HP15_p187g44 0.31 +0.8
37,596 + HP15_p187g44 0.31 -0.4
37,603 - HP15_p187g44 0.32 +0.9
37,624 - HP15_p187g44 0.34 +1.1
37,624 - HP15_p187g44 0.34 -3.4
37,775 + HP15_p187g44 0.47 -0.7
37,811 - HP15_p187g44 0.50 -0.5
37,875 + HP15_p187g44 0.56 +1.7
37,944 - HP15_p187g44 0.62 -0.2
37,948 + HP15_p187g44 0.62 +0.5
37,959 - HP15_p187g44 0.63 +0.4
37,995 - HP15_p187g44 0.67 +0.8
38,063 + HP15_p187g44 0.73 +0.8
38,063 + HP15_p187g44 0.73 -0.8
38,063 + HP15_p187g44 0.73 -0.4
38,071 - HP15_p187g44 0.73 -0.2
38,072 - HP15_p187g44 0.74 -0.5
38,074 + HP15_p187g44 0.74 -0.4
38,085 + HP15_p187g44 0.75 -0.8
38,093 - HP15_p187g44 0.75 -2.6
38,130 + HP15_p187g44 0.79 +0.4
38,138 + HP15_p187g44 0.79 -0.2
38,181 - HP15_p187g44 0.83 -0.6
38,202 - HP15_p187g44 0.85 -0.5
38,260 - -0.4
38,327 + +0.3
38,332 + -0.4
38,340 - -0.9
38,340 - +0.8
38,340 - +0.1
38,340 - +0.6
38,340 - -0.2
38,340 - -0.3
38,340 - -0.8
38,340 - -0.3
38,340 - -0.6
38,340 - +1.3
38,340 - +0.2
38,370 - -0.1
38,372 - +0.0
38,486 - HP15_p187g45 0.26 -0.6
38,487 - HP15_p187g45 0.26 -3.2
38,517 + HP15_p187g45 0.33 +0.0
38,535 - HP15_p187g45 0.37 +0.4
38,535 - HP15_p187g45 0.37 -0.2
38,549 - HP15_p187g45 0.41 -0.1
38,600 + HP15_p187g45 0.52 +1.0
38,634 + HP15_p187g45 0.60 -0.6
38,647 + HP15_p187g45 0.63 +0.3
38,665 - HP15_p187g45 0.67 +1.0
38,712 + HP15_p187g45 0.78 -0.4
38,712 + HP15_p187g45 0.78 -1.4
38,720 - HP15_p187g45 0.80 -1.3
38,720 - HP15_p187g45 0.80 -1.0
38,782 + -2.9
38,785 - +0.2
38,791 + +0.1
38,906 - -0.5
38,923 - -1.9
38,933 + +4.0
38,945 + +0.8
38,945 - +0.2
38,973 + -2.6
39,003 + -0.1
39,003 + +0.1
39,011 - -0.7
39,011 - -2.2
39,040 + HP15_p187g46 0.10 -0.2
39,073 + HP15_p187g46 0.12 +0.9
39,079 - HP15_p187g46 0.12 -0.6
39,141 - HP15_p187g46 0.15 -1.6
39,143 + HP15_p187g46 0.15 +0.2
39,150 + HP15_p187g46 0.15 +0.0
39,151 - HP15_p187g46 0.15 -0.1
39,151 - HP15_p187g46 0.15 -2.2
39,158 - HP15_p187g46 0.15 +0.0
39,179 + HP15_p187g46 0.16 +0.2
39,236 + HP15_p187g46 0.19 -0.7
39,238 + HP15_p187g46 0.19 -1.0
39,244 - HP15_p187g46 0.19 +0.2
39,294 + HP15_p187g46 0.22 -0.5

Or see this region's nucleotide sequence