Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4055 and HP15_4056 are separated by 220 nucleotides HP15_4056 and HP15_4057 are separated by 7 nucleotides HP15_4057 and HP15_4058 are separated by 84 nucleotides HP15_4058 and HP15_4059 overlap by 17 nucleotides
HP15_4055: HP15_4055 - membrane protein containing DUF81, at 4,289,983 to 4,290,705
_4055
HP15_4056: HP15_4056 - SEC-C motif domain protein, at 4,290,926 to 4,291,273
_4056
HP15_4057: HP15_4057 - protein containing rhodanese-like domains, at 4,291,281 to 4,291,661
_4057
HP15_4058: HP15_4058 - putative thiol-disulfide oxidoreductase DCC, at 4,291,746 to 4,292,120
_4058
HP15_4059: HP15_4059 - protein containing CHAD domain, at 4,292,104 to 4,293,456
_4059
Position (kb)
4291
4292 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4290.337 kb on - strand, within HP15_4055 at 4290.342 kb on - strand, within HP15_4055 at 4290.361 kb on - strand, within HP15_4055 at 4290.375 kb on + strand, within HP15_4055 at 4290.450 kb on - strand, within HP15_4055 at 4290.505 kb on - strand, within HP15_4055 at 4290.505 kb on - strand, within HP15_4055 at 4290.505 kb on - strand, within HP15_4055 at 4290.604 kb on - strand, within HP15_4055 at 4290.744 kb on + strand at 4290.895 kb on + strand at 4291.014 kb on + strand, within HP15_4056 at 4291.093 kb on - strand, within HP15_4056 at 4291.111 kb on + strand, within HP15_4056 at 4291.111 kb on + strand, within HP15_4056 at 4291.170 kb on + strand, within HP15_4056 at 4291.170 kb on + strand, within HP15_4056 at 4291.204 kb on + strand, within HP15_4056 at 4291.258 kb on + strand at 4291.346 kb on - strand, within HP15_4057 at 4291.368 kb on + strand, within HP15_4057 at 4291.641 kb on - strand at 4291.679 kb on - strand at 4291.690 kb on + strand at 4291.692 kb on - strand at 4291.709 kb on + strand at 4291.709 kb on + strand at 4291.851 kb on + strand, within HP15_4058 at 4291.858 kb on + strand, within HP15_4058 at 4291.922 kb on + strand, within HP15_4058 at 4291.922 kb on + strand, within HP15_4058 at 4291.954 kb on + strand, within HP15_4058 at 4291.962 kb on - strand, within HP15_4058 at 4291.966 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.005 kb on + strand, within HP15_4058 at 4292.011 kb on - strand, within HP15_4058 at 4292.030 kb on - strand, within HP15_4058 at 4292.159 kb on + strand at 4292.303 kb on - strand, within HP15_4059 at 4292.402 kb on + strand, within HP15_4059 at 4292.402 kb on + strand, within HP15_4059 at 4292.410 kb on - strand, within HP15_4059 at 4292.532 kb on + strand, within HP15_4059 at 4292.540 kb on - strand, within HP15_4059 at 4292.609 kb on + strand, within HP15_4059
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 4,290,337 - HP15_4055 0.49 -0.1 4,290,342 - HP15_4055 0.50 +1.1 4,290,361 - HP15_4055 0.52 +1.5 4,290,375 + HP15_4055 0.54 +0.3 4,290,450 - HP15_4055 0.65 -0.2 4,290,505 - HP15_4055 0.72 +0.9 4,290,505 - HP15_4055 0.72 -0.1 4,290,505 - HP15_4055 0.72 +0.1 4,290,604 - HP15_4055 0.86 -1.8 4,290,744 + -3.9 4,290,895 + +0.5 4,291,014 + HP15_4056 0.25 +2.1 4,291,093 - HP15_4056 0.48 -1.0 4,291,111 + HP15_4056 0.53 +0.0 4,291,111 + HP15_4056 0.53 +0.1 4,291,170 + HP15_4056 0.70 -2.7 4,291,170 + HP15_4056 0.70 -0.3 4,291,204 + HP15_4056 0.80 -0.0 4,291,258 + +0.5 4,291,346 - HP15_4057 0.17 -1.1 4,291,368 + HP15_4057 0.23 -1.7 4,291,641 - -0.6 4,291,679 - +0.1 4,291,690 + -2.9 4,291,692 - +0.7 4,291,709 + -0.1 4,291,709 + +0.0 4,291,851 + HP15_4058 0.28 +0.3 4,291,858 + HP15_4058 0.30 +1.1 4,291,922 + HP15_4058 0.47 +0.5 4,291,922 + HP15_4058 0.47 -3.6 4,291,954 + HP15_4058 0.55 -0.8 4,291,962 - HP15_4058 0.58 +0.7 4,291,966 + HP15_4058 0.59 +0.7 4,292,003 + HP15_4058 0.69 +0.1 4,292,003 + HP15_4058 0.69 -0.7 4,292,003 + HP15_4058 0.69 -0.5 4,292,003 + HP15_4058 0.69 +0.1 4,292,003 + HP15_4058 0.69 -0.0 4,292,005 + HP15_4058 0.69 -2.7 4,292,011 - HP15_4058 0.71 -1.6 4,292,030 - HP15_4058 0.76 +0.8 4,292,159 + -1.9 4,292,303 - HP15_4059 0.15 -0.6 4,292,402 + HP15_4059 0.22 +0.5 4,292,402 + HP15_4059 0.22 -0.3 4,292,410 - HP15_4059 0.23 -1.7 4,292,532 + HP15_4059 0.32 -1.6 4,292,540 - HP15_4059 0.32 +0.5 4,292,609 + HP15_4059 0.37 +1.5
Or see this region's nucleotide sequence