Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4137

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4136 and Psest_4137 overlap by 1 nucleotidesPsest_4137 and Psest_4138 overlap by 4 nucleotidesPsest_4138 and Psest_4139 overlap by 38 nucleotides Psest_4136: Psest_4136 - TonB-dependent siderophore receptor, at 4,316,551 to 4,318,764 _4136 Psest_4137: Psest_4137 - Uncharacterized iron-regulated membrane protein, at 4,318,764 to 4,319,891 _4137 Psest_4138: Psest_4138 - hypothetical protein, at 4,319,888 to 4,320,109 _4138 Psest_4139: Psest_4139 - PAS domain S-box, at 4,320,072 to 4,322,858 _4139 Position (kb) 4318 4319 4320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4317.769 kb on + strand, within Psest_4136at 4317.770 kb on - strand, within Psest_4136at 4317.770 kb on - strand, within Psest_4136at 4317.770 kb on - strand, within Psest_4136at 4317.770 kb on - strand, within Psest_4136at 4317.787 kb on + strand, within Psest_4136at 4317.787 kb on + strand, within Psest_4136at 4317.787 kb on + strand, within Psest_4136at 4317.787 kb on + strand, within Psest_4136at 4317.787 kb on + strand, within Psest_4136at 4317.788 kb on - strand, within Psest_4136at 4317.788 kb on - strand, within Psest_4136at 4317.798 kb on + strand, within Psest_4136at 4317.799 kb on - strand, within Psest_4136at 4317.802 kb on + strand, within Psest_4136at 4317.802 kb on + strand, within Psest_4136at 4317.802 kb on + strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.803 kb on - strand, within Psest_4136at 4317.982 kb on + strand, within Psest_4136at 4317.982 kb on + strand, within Psest_4136at 4317.982 kb on + strand, within Psest_4136at 4317.983 kb on - strand, within Psest_4136at 4317.983 kb on - strand, within Psest_4136at 4317.983 kb on - strand, within Psest_4136at 4317.989 kb on - strand, within Psest_4136at 4317.989 kb on - strand, within Psest_4136at 4317.989 kb on - strand, within Psest_4136at 4317.989 kb on - strand, within Psest_4136at 4317.989 kb on - strand, within Psest_4136at 4317.989 kb on - strand, within Psest_4136at 4318.015 kb on + strand, within Psest_4136at 4318.016 kb on - strand, within Psest_4136at 4318.016 kb on - strand, within Psest_4136at 4318.054 kb on + strand, within Psest_4136at 4318.054 kb on + strand, within Psest_4136at 4318.054 kb on + strand, within Psest_4136at 4318.055 kb on - strand, within Psest_4136at 4318.055 kb on - strand, within Psest_4136at 4318.055 kb on - strand, within Psest_4136at 4318.081 kb on + strand, within Psest_4136at 4318.081 kb on + strand, within Psest_4136at 4318.081 kb on + strand, within Psest_4136at 4318.081 kb on + strand, within Psest_4136at 4318.082 kb on - strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.090 kb on + strand, within Psest_4136at 4318.091 kb on - strand, within Psest_4136at 4318.091 kb on - strand, within Psest_4136at 4318.116 kb on + strand, within Psest_4136at 4318.119 kb on - strand, within Psest_4136at 4318.119 kb on - strand, within Psest_4136at 4318.119 kb on - strand, within Psest_4136at 4318.119 kb on - strand, within Psest_4136at 4318.177 kb on + strand, within Psest_4136at 4318.177 kb on + strand, within Psest_4136at 4318.178 kb on - strand, within Psest_4136at 4318.178 kb on - strand, within Psest_4136at 4318.178 kb on - strand, within Psest_4136at 4318.178 kb on - strand, within Psest_4136at 4318.210 kb on + strand, within Psest_4136at 4318.210 kb on + strand, within Psest_4136at 4318.210 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.351 kb on + strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.352 kb on - strand, within Psest_4136at 4318.358 kb on + strand, within Psest_4136at 4318.359 kb on - strand, within Psest_4136at 4318.508 kb on + strand, within Psest_4136at 4318.525 kb on + strand, within Psest_4136at 4318.526 kb on - strand, within Psest_4136at 4318.526 kb on - strand, within Psest_4136at 4318.527 kb on + strand, within Psest_4136at 4318.528 kb on - strand, within Psest_4136at 4318.540 kb on + strand, within Psest_4136at 4318.541 kb on - strand, within Psest_4136at 4318.672 kb on + strandat 4318.672 kb on + strandat 4318.673 kb on - strandat 4318.708 kb on + strandat 4318.709 kb on - strandat 4318.709 kb on - strandat 4318.709 kb on - strandat 4318.802 kb on + strandat 4318.802 kb on + strandat 4318.802 kb on + strandat 4318.802 kb on + strandat 4318.803 kb on - strandat 4318.803 kb on - strandat 4318.823 kb on + strandat 4318.981 kb on - strand, within Psest_4137at 4319.002 kb on - strand, within Psest_4137at 4319.002 kb on - strand, within Psest_4137at 4319.037 kb on + strand, within Psest_4137at 4319.037 kb on + strand, within Psest_4137at 4319.038 kb on - strand, within Psest_4137at 4319.038 kb on - strand, within Psest_4137at 4319.038 kb on - strand, within Psest_4137at 4319.106 kb on - strand, within Psest_4137at 4319.160 kb on + strand, within Psest_4137at 4319.160 kb on + strand, within Psest_4137at 4319.182 kb on - strand, within Psest_4137at 4319.405 kb on + strand, within Psest_4137at 4319.405 kb on + strand, within Psest_4137at 4319.405 kb on + strand, within Psest_4137at 4319.406 kb on - strand, within Psest_4137at 4319.480 kb on - strand, within Psest_4137at 4319.480 kb on - strand, within Psest_4137at 4319.730 kb on + strand, within Psest_4137at 4319.730 kb on + strand, within Psest_4137at 4319.731 kb on - strand, within Psest_4137at 4319.850 kb on + strandat 4319.850 kb on + strandat 4319.851 kb on - strandat 4319.851 kb on - strandat 4320.149 kb on + strandat 4320.310 kb on + strandat 4320.476 kb on - strand, within Psest_4139at 4320.716 kb on - strand, within Psest_4139at 4320.831 kb on + strand, within Psest_4139at 4320.831 kb on + strand, within Psest_4139at 4320.831 kb on + strand, within Psest_4139at 4320.831 kb on + strand, within Psest_4139at 4320.831 kb on + strand, within Psest_4139at 4320.831 kb on + strandat 4320.832 kb on - strand, within Psest_4139at 4320.832 kb on - strand, within Psest_4139at 4320.832 kb on - strand, within Psest_4139at 4320.832 kb on - strand, within Psest_4139at 4320.860 kb on - strand, within Psest_4139

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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4,317,769 + Psest_4136 0.55 -0.3
4,317,770 - Psest_4136 0.55 +0.5
4,317,770 - Psest_4136 0.55 +1.2
4,317,770 - Psest_4136 0.55 +0.6
4,317,770 - Psest_4136 0.55 -0.6
4,317,787 + Psest_4136 0.56 -1.8
4,317,787 + Psest_4136 0.56 -0.8
4,317,787 + Psest_4136 0.56 +1.7
4,317,787 + Psest_4136 0.56 -0.1
4,317,787 + Psest_4136 0.56 -0.3
4,317,788 - Psest_4136 0.56 -0.3
4,317,788 - Psest_4136 0.56 +0.7
4,317,798 + Psest_4136 0.56 -3.1
4,317,799 - Psest_4136 0.56 -0.1
4,317,802 + Psest_4136 0.57 -0.3
4,317,802 + Psest_4136 0.57 +0.3
4,317,802 + Psest_4136 0.57 -0.8
4,317,803 - Psest_4136 0.57 -0.1
4,317,803 - Psest_4136 0.57 -0.8
4,317,803 - Psest_4136 0.57 -0.6
4,317,803 - Psest_4136 0.57 -1.8
4,317,803 - Psest_4136 0.57 +0.7
4,317,803 - Psest_4136 0.57 -0.3
4,317,803 - Psest_4136 0.57 -0.6
4,317,803 - Psest_4136 0.57 -0.6
4,317,982 + Psest_4136 0.65 +0.3
4,317,982 + Psest_4136 0.65 +1.5
4,317,982 + Psest_4136 0.65 -1.3
4,317,983 - Psest_4136 0.65 -2.0
4,317,983 - Psest_4136 0.65 +0.9
4,317,983 - Psest_4136 0.65 -0.1
4,317,989 - Psest_4136 0.65 +1.3
4,317,989 - Psest_4136 0.65 +0.3
4,317,989 - Psest_4136 0.65 -2.9
4,317,989 - Psest_4136 0.65 +1.3
4,317,989 - Psest_4136 0.65 -0.1
4,317,989 - Psest_4136 0.65 -2.2
4,318,015 + Psest_4136 0.66 +0.4
4,318,016 - Psest_4136 0.66 +0.5
4,318,016 - Psest_4136 0.66 -0.3
4,318,054 + Psest_4136 0.68 -0.7
4,318,054 + Psest_4136 0.68 +0.4
4,318,054 + Psest_4136 0.68 -0.8
4,318,055 - Psest_4136 0.68 -0.6
4,318,055 - Psest_4136 0.68 +0.0
4,318,055 - Psest_4136 0.68 -0.5
4,318,081 + Psest_4136 0.69 +1.7
4,318,081 + Psest_4136 0.69 -2.3
4,318,081 + Psest_4136 0.69 -0.0
4,318,081 + Psest_4136 0.69 -1.6
4,318,082 - Psest_4136 0.69 -1.1
4,318,090 + Psest_4136 0.70 +0.2
4,318,090 + Psest_4136 0.70 +2.2
4,318,090 + Psest_4136 0.70 +0.7
4,318,090 + Psest_4136 0.70 -0.2
4,318,090 + Psest_4136 0.70 +1.7
4,318,090 + Psest_4136 0.70 -2.0
4,318,090 + Psest_4136 0.70 +0.2
4,318,090 + Psest_4136 0.70 +0.2
4,318,090 + Psest_4136 0.70 -0.1
4,318,091 - Psest_4136 0.70 -0.4
4,318,091 - Psest_4136 0.70 -0.1
4,318,116 + Psest_4136 0.71 -3.1
4,318,119 - Psest_4136 0.71 +0.1
4,318,119 - Psest_4136 0.71 -1.6
4,318,119 - Psest_4136 0.71 -2.0
4,318,119 - Psest_4136 0.71 -0.8
4,318,177 + Psest_4136 0.73 +0.2
4,318,177 + Psest_4136 0.73 -2.2
4,318,178 - Psest_4136 0.73 -0.3
4,318,178 - Psest_4136 0.73 +0.2
4,318,178 - Psest_4136 0.73 +0.4
4,318,178 - Psest_4136 0.73 -0.8
4,318,210 + Psest_4136 0.75 -1.0
4,318,210 + Psest_4136 0.75 -2.1
4,318,210 + Psest_4136 0.75 -0.6
4,318,351 + Psest_4136 0.81 +0.7
4,318,351 + Psest_4136 0.81 -0.7
4,318,351 + Psest_4136 0.81 -1.8
4,318,351 + Psest_4136 0.81 -0.8
4,318,351 + Psest_4136 0.81 +0.4
4,318,351 + Psest_4136 0.81 -1.1
4,318,351 + Psest_4136 0.81 -0.4
4,318,351 + Psest_4136 0.81 +0.2
4,318,351 + Psest_4136 0.81 -0.7
4,318,351 + Psest_4136 0.81 -0.6
4,318,351 + Psest_4136 0.81 -2.4
4,318,352 - Psest_4136 0.81 +0.2
4,318,352 - Psest_4136 0.81 +0.7
4,318,352 - Psest_4136 0.81 -0.6
4,318,352 - Psest_4136 0.81 -1.4
4,318,352 - Psest_4136 0.81 -1.6
4,318,352 - Psest_4136 0.81 -1.5
4,318,352 - Psest_4136 0.81 -2.0
4,318,358 + Psest_4136 0.82 -1.7
4,318,359 - Psest_4136 0.82 -2.3
4,318,508 + Psest_4136 0.88 -0.4
4,318,525 + Psest_4136 0.89 -0.6
4,318,526 - Psest_4136 0.89 +0.2
4,318,526 - Psest_4136 0.89 -0.6
4,318,527 + Psest_4136 0.89 +0.2
4,318,528 - Psest_4136 0.89 -1.1
4,318,540 + Psest_4136 0.90 +0.4
4,318,541 - Psest_4136 0.90 +1.7
4,318,672 + -0.1
4,318,672 + +3.3
4,318,673 - +3.1
4,318,708 + +0.1
4,318,709 - -1.6
4,318,709 - -2.7
4,318,709 - -1.3
4,318,802 + +1.7
4,318,802 + -2.2
4,318,802 + +0.7
4,318,802 + +0.0
4,318,803 - -0.3
4,318,803 - +0.7
4,318,823 + +0.5
4,318,981 - Psest_4137 0.19 +0.3
4,319,002 - Psest_4137 0.21 -0.8
4,319,002 - Psest_4137 0.21 +0.2
4,319,037 + Psest_4137 0.24 +0.3
4,319,037 + Psest_4137 0.24 +0.2
4,319,038 - Psest_4137 0.24 -0.6
4,319,038 - Psest_4137 0.24 -0.9
4,319,038 - Psest_4137 0.24 -1.6
4,319,106 - Psest_4137 0.30 -2.1
4,319,160 + Psest_4137 0.35 +1.7
4,319,160 + Psest_4137 0.35 +0.6
4,319,182 - Psest_4137 0.37 -1.0
4,319,405 + Psest_4137 0.57 -0.6
4,319,405 + Psest_4137 0.57 +1.7
4,319,405 + Psest_4137 0.57 +1.3
4,319,406 - Psest_4137 0.57 -0.3
4,319,480 - Psest_4137 0.63 -1.2
4,319,480 - Psest_4137 0.63 -2.3
4,319,730 + Psest_4137 0.86 -0.3
4,319,730 + Psest_4137 0.86 -0.1
4,319,731 - Psest_4137 0.86 -0.8
4,319,850 + +1.2
4,319,850 + +0.4
4,319,851 - -0.8
4,319,851 - -0.6
4,320,149 + +0.9
4,320,310 + +1.4
4,320,476 - Psest_4139 0.14 +1.3
4,320,716 - Psest_4139 0.23 -0.4
4,320,831 + Psest_4139 0.27 +0.3
4,320,831 + Psest_4139 0.27 -0.6
4,320,831 + Psest_4139 0.27 -0.9
4,320,831 + Psest_4139 0.27 -0.8
4,320,831 + Psest_4139 0.27 +0.2
4,320,831 + +1.8
4,320,832 - Psest_4139 0.27 +0.5
4,320,832 - Psest_4139 0.27 +0.4
4,320,832 - Psest_4139 0.27 +0.8
4,320,832 - Psest_4139 0.27 -0.3
4,320,860 - Psest_4139 0.28 +0.8

Or see this region's nucleotide sequence