Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3869 and HP15_3870 are separated by 101 nucleotides HP15_3870 and HP15_3871 are separated by 48 nucleotides HP15_3871 and HP15_3872 are separated by 132 nucleotides
HP15_3869: HP15_3869 - short-chain dehydrogenase/reductase SDR, at 4,095,399 to 4,096,220
_3869
HP15_3870: HP15_3870 - diguanylate cyclase, at 4,096,322 to 4,097,422
_3870
HP15_3871: HP15_3871 - glutamine amidotransferase class-II, at 4,097,471 to 4,098,256
_3871
HP15_3872: HP15_3872 - uncharacterized conserved protein UCP07580, at 4,098,389 to 4,099,294
_3872
Position (kb)
4096
4097
4098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4095.403 kb on - strand at 4095.442 kb on + strand at 4095.453 kb on + strand at 4095.461 kb on - strand at 4095.461 kb on - strand at 4095.478 kb on - strand at 4095.494 kb on - strand, within HP15_3869 at 4095.499 kb on + strand, within HP15_3869 at 4095.509 kb on + strand, within HP15_3869 at 4095.637 kb on + strand, within HP15_3869 at 4095.645 kb on - strand, within HP15_3869 at 4095.683 kb on + strand, within HP15_3869 at 4095.698 kb on + strand, within HP15_3869 at 4095.761 kb on - strand, within HP15_3869 at 4095.780 kb on + strand, within HP15_3869 at 4095.831 kb on + strand, within HP15_3869 at 4095.901 kb on - strand, within HP15_3869 at 4096.032 kb on + strand, within HP15_3869 at 4096.046 kb on + strand, within HP15_3869 at 4096.158 kb on + strand at 4096.166 kb on - strand at 4096.168 kb on - strand at 4096.324 kb on + strand at 4096.356 kb on + strand at 4096.356 kb on + strand at 4096.371 kb on + strand at 4096.384 kb on - strand at 4096.519 kb on - strand, within HP15_3870 at 4096.562 kb on - strand, within HP15_3870 at 4096.568 kb on + strand, within HP15_3870 at 4096.624 kb on - strand, within HP15_3870 at 4096.726 kb on - strand, within HP15_3870 at 4096.782 kb on - strand, within HP15_3870 at 4096.808 kb on - strand, within HP15_3870 at 4096.858 kb on + strand, within HP15_3870 at 4096.879 kb on + strand, within HP15_3870 at 4096.993 kb on + strand, within HP15_3870 at 4097.014 kb on + strand, within HP15_3870 at 4097.021 kb on + strand, within HP15_3870 at 4097.022 kb on - strand, within HP15_3870 at 4097.034 kb on + strand, within HP15_3870 at 4097.042 kb on - strand, within HP15_3870 at 4097.084 kb on - strand, within HP15_3870 at 4097.175 kb on + strand, within HP15_3870 at 4097.183 kb on - strand, within HP15_3870 at 4097.183 kb on - strand, within HP15_3870 at 4097.232 kb on - strand, within HP15_3870 at 4097.290 kb on - strand, within HP15_3870 at 4097.327 kb on + strand at 4097.340 kb on - strand at 4097.351 kb on + strand at 4097.351 kb on + strand at 4097.359 kb on - strand at 4097.361 kb on - strand at 4097.508 kb on - strand at 4097.536 kb on + strand at 4097.566 kb on + strand, within HP15_3871 at 4097.572 kb on + strand, within HP15_3871 at 4097.657 kb on - strand, within HP15_3871 at 4097.660 kb on + strand, within HP15_3871 at 4097.667 kb on - strand, within HP15_3871 at 4097.668 kb on - strand, within HP15_3871 at 4097.668 kb on - strand, within HP15_3871 at 4097.780 kb on - strand, within HP15_3871 at 4097.800 kb on + strand, within HP15_3871 at 4097.862 kb on - strand, within HP15_3871 at 4098.039 kb on + strand, within HP15_3871 at 4098.056 kb on + strand, within HP15_3871 at 4098.063 kb on + strand, within HP15_3871 at 4098.071 kb on + strand, within HP15_3871 at 4098.087 kb on + strand, within HP15_3871 at 4098.222 kb on - strand at 4098.256 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 4,095,403 - +4.0 4,095,442 + +0.4 4,095,453 + +1.5 4,095,461 - -1.1 4,095,461 - +0.2 4,095,478 - +0.5 4,095,494 - HP15_3869 0.12 -0.1 4,095,499 + HP15_3869 0.12 -1.8 4,095,509 + HP15_3869 0.13 -0.6 4,095,637 + HP15_3869 0.29 -0.4 4,095,645 - HP15_3869 0.30 -1.0 4,095,683 + HP15_3869 0.35 -1.0 4,095,698 + HP15_3869 0.36 -2.2 4,095,761 - HP15_3869 0.44 -0.8 4,095,780 + HP15_3869 0.46 -0.7 4,095,831 + HP15_3869 0.53 -0.4 4,095,901 - HP15_3869 0.61 +0.2 4,096,032 + HP15_3869 0.77 +0.5 4,096,046 + HP15_3869 0.79 +0.4 4,096,158 + +0.1 4,096,166 - -0.2 4,096,168 - +0.5 4,096,324 + +0.8 4,096,356 + -0.0 4,096,356 + +1.6 4,096,371 + -3.1 4,096,384 - -0.9 4,096,519 - HP15_3870 0.18 -2.5 4,096,562 - HP15_3870 0.22 -1.1 4,096,568 + HP15_3870 0.22 -1.8 4,096,624 - HP15_3870 0.27 -0.1 4,096,726 - HP15_3870 0.37 -0.7 4,096,782 - HP15_3870 0.42 -0.3 4,096,808 - HP15_3870 0.44 -1.1 4,096,858 + HP15_3870 0.49 -0.8 4,096,879 + HP15_3870 0.51 -2.4 4,096,993 + HP15_3870 0.61 -1.6 4,097,014 + HP15_3870 0.63 +0.1 4,097,021 + HP15_3870 0.63 +1.5 4,097,022 - HP15_3870 0.64 +1.4 4,097,034 + HP15_3870 0.65 +0.2 4,097,042 - HP15_3870 0.65 -0.4 4,097,084 - HP15_3870 0.69 +0.5 4,097,175 + HP15_3870 0.77 -0.5 4,097,183 - HP15_3870 0.78 -0.1 4,097,183 - HP15_3870 0.78 -0.7 4,097,232 - HP15_3870 0.83 -0.4 4,097,290 - HP15_3870 0.88 -0.9 4,097,327 + -0.0 4,097,340 - -2.4 4,097,351 + -0.6 4,097,351 + -0.5 4,097,359 - +1.3 4,097,361 - -1.1 4,097,508 - -1.2 4,097,536 + -0.6 4,097,566 + HP15_3871 0.12 -0.9 4,097,572 + HP15_3871 0.13 -0.0 4,097,657 - HP15_3871 0.24 -1.4 4,097,660 + HP15_3871 0.24 +0.9 4,097,667 - HP15_3871 0.25 +0.9 4,097,668 - HP15_3871 0.25 +1.0 4,097,668 - HP15_3871 0.25 -0.3 4,097,780 - HP15_3871 0.39 -0.3 4,097,800 + HP15_3871 0.42 -2.0 4,097,862 - HP15_3871 0.50 -0.7 4,098,039 + HP15_3871 0.72 +0.1 4,098,056 + HP15_3871 0.74 +0.2 4,098,063 + HP15_3871 0.75 +0.9 4,098,071 + HP15_3871 0.76 -0.0 4,098,087 + HP15_3871 0.78 +0.2 4,098,222 - -3.5 4,098,256 + +0.4
Or see this region's nucleotide sequence