Strain Fitness in Marinobacter adhaerens HP15 around HP15_3696

Experiment: m.b. Nalidixic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3694 and HP15_3695 are separated by 38 nucleotidesHP15_3695 and HP15_3696 overlap by 2 nucleotidesHP15_3696 and HP15_3697 are separated by 164 nucleotides HP15_3694: HP15_3694 - efflux transporter, RND family, MFP subunit, at 3,896,476 to 3,897,570 _3694 HP15_3695: HP15_3695 - lipoprotein, at 3,897,609 to 3,898,169 _3695 HP15_3696: HP15_3696 - acyl-CoA dehydrogenase domain protein, at 3,898,168 to 3,900,237 _3696 HP15_3697: HP15_3697 - phytanoyl-CoA dioxygenase, at 3,900,402 to 3,901,337 _3697 Position (kb) 3898 3899 3900 3901Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3897.176 kb on - strand, within HP15_3694at 3897.176 kb on - strand, within HP15_3694at 3897.176 kb on - strand, within HP15_3694at 3897.246 kb on + strand, within HP15_3694at 3897.257 kb on + strand, within HP15_3694at 3897.257 kb on + strand, within HP15_3694at 3897.265 kb on - strand, within HP15_3694at 3897.363 kb on + strand, within HP15_3694at 3897.373 kb on + strand, within HP15_3694at 3897.614 kb on - strandat 3897.677 kb on - strand, within HP15_3695at 3897.733 kb on - strand, within HP15_3695at 3897.830 kb on + strand, within HP15_3695at 3897.867 kb on - strand, within HP15_3695at 3897.887 kb on + strand, within HP15_3695at 3897.913 kb on - strand, within HP15_3695at 3898.026 kb on + strand, within HP15_3695at 3898.040 kb on + strand, within HP15_3695at 3898.048 kb on - strand, within HP15_3695at 3898.110 kb on - strand, within HP15_3695at 3898.180 kb on - strandat 3898.180 kb on - strandat 3898.181 kb on + strandat 3898.189 kb on - strandat 3898.340 kb on + strandat 3898.389 kb on - strand, within HP15_3696at 3898.415 kb on - strand, within HP15_3696at 3898.476 kb on - strand, within HP15_3696at 3898.490 kb on + strand, within HP15_3696at 3898.495 kb on + strand, within HP15_3696at 3898.503 kb on - strand, within HP15_3696at 3898.503 kb on - strand, within HP15_3696at 3898.503 kb on - strand, within HP15_3696at 3898.573 kb on + strand, within HP15_3696at 3898.593 kb on - strand, within HP15_3696at 3898.720 kb on + strand, within HP15_3696at 3898.794 kb on - strand, within HP15_3696at 3898.796 kb on + strand, within HP15_3696at 3898.804 kb on - strand, within HP15_3696at 3898.804 kb on - strand, within HP15_3696at 3898.841 kb on + strand, within HP15_3696at 3898.865 kb on + strand, within HP15_3696at 3898.933 kb on + strand, within HP15_3696at 3898.952 kb on - strand, within HP15_3696at 3898.958 kb on - strand, within HP15_3696at 3898.963 kb on + strand, within HP15_3696at 3899.061 kb on - strand, within HP15_3696at 3899.061 kb on - strand, within HP15_3696at 3899.061 kb on - strand, within HP15_3696at 3899.084 kb on - strand, within HP15_3696at 3899.149 kb on - strand, within HP15_3696at 3899.158 kb on + strand, within HP15_3696at 3899.158 kb on + strand, within HP15_3696at 3899.158 kb on + strand, within HP15_3696at 3899.158 kb on + strand, within HP15_3696at 3899.166 kb on - strand, within HP15_3696at 3899.166 kb on - strand, within HP15_3696at 3899.218 kb on - strand, within HP15_3696at 3899.297 kb on - strand, within HP15_3696at 3899.356 kb on + strand, within HP15_3696at 3899.364 kb on - strand, within HP15_3696at 3899.364 kb on - strand, within HP15_3696at 3899.366 kb on + strand, within HP15_3696at 3899.457 kb on - strand, within HP15_3696at 3899.516 kb on - strand, within HP15_3696at 3899.516 kb on - strand, within HP15_3696at 3899.600 kb on + strand, within HP15_3696at 3899.707 kb on + strand, within HP15_3696at 3899.710 kb on - strand, within HP15_3696at 3899.732 kb on + strand, within HP15_3696at 3899.732 kb on + strand, within HP15_3696at 3899.830 kb on + strand, within HP15_3696at 3899.888 kb on + strand, within HP15_3696at 3899.891 kb on - strand, within HP15_3696at 3899.961 kb on + strand, within HP15_3696at 3900.025 kb on + strand, within HP15_3696at 3900.025 kb on + strand, within HP15_3696at 3900.034 kb on - strandat 3900.079 kb on + strandat 3900.097 kb on - strandat 3900.103 kb on - strandat 3900.155 kb on - strandat 3900.217 kb on + strandat 3900.251 kb on + strandat 3900.251 kb on + strandat 3900.251 kb on + strandat 3900.259 kb on - strandat 3900.415 kb on - strandat 3900.472 kb on + strandat 3900.472 kb on + strandat 3900.488 kb on - strandat 3900.508 kb on - strand, within HP15_3697at 3900.561 kb on - strand, within HP15_3697at 3900.592 kb on - strand, within HP15_3697at 3900.592 kb on - strand, within HP15_3697at 3900.758 kb on - strand, within HP15_3697at 3900.771 kb on + strand, within HP15_3697at 3900.794 kb on - strand, within HP15_3697at 3900.798 kb on - strand, within HP15_3697at 3900.798 kb on - strand, within HP15_3697at 3900.888 kb on + strand, within HP15_3697at 3900.979 kb on + strand, within HP15_3697at 3901.003 kb on + strand, within HP15_3697at 3901.044 kb on - strand, within HP15_3697at 3901.170 kb on + strand, within HP15_3697

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml
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3,897,176 - HP15_3694 0.64 -1.7
3,897,176 - HP15_3694 0.64 +1.1
3,897,176 - HP15_3694 0.64 +0.2
3,897,246 + HP15_3694 0.70 -0.2
3,897,257 + HP15_3694 0.71 +0.1
3,897,257 + HP15_3694 0.71 +0.3
3,897,265 - HP15_3694 0.72 -0.5
3,897,363 + HP15_3694 0.81 -0.1
3,897,373 + HP15_3694 0.82 +1.4
3,897,614 - +0.9
3,897,677 - HP15_3695 0.12 +0.6
3,897,733 - HP15_3695 0.22 +1.4
3,897,830 + HP15_3695 0.39 -2.5
3,897,867 - HP15_3695 0.46 +0.9
3,897,887 + HP15_3695 0.50 -1.5
3,897,913 - HP15_3695 0.54 +1.6
3,898,026 + HP15_3695 0.74 -0.1
3,898,040 + HP15_3695 0.77 +0.1
3,898,048 - HP15_3695 0.78 -0.1
3,898,110 - HP15_3695 0.89 -0.1
3,898,180 - +0.8
3,898,180 - +1.2
3,898,181 + -1.4
3,898,189 - -1.9
3,898,340 + +0.3
3,898,389 - HP15_3696 0.11 +3.0
3,898,415 - HP15_3696 0.12 +0.4
3,898,476 - HP15_3696 0.15 +0.4
3,898,490 + HP15_3696 0.16 -0.4
3,898,495 + HP15_3696 0.16 +0.8
3,898,503 - HP15_3696 0.16 +0.8
3,898,503 - HP15_3696 0.16 +0.8
3,898,503 - HP15_3696 0.16 +0.3
3,898,573 + HP15_3696 0.20 -0.1
3,898,593 - HP15_3696 0.21 +1.8
3,898,720 + HP15_3696 0.27 +2.1
3,898,794 - HP15_3696 0.30 -1.0
3,898,796 + HP15_3696 0.30 +0.3
3,898,804 - HP15_3696 0.31 +1.3
3,898,804 - HP15_3696 0.31 -0.4
3,898,841 + HP15_3696 0.33 +0.5
3,898,865 + HP15_3696 0.34 +0.5
3,898,933 + HP15_3696 0.37 +0.2
3,898,952 - HP15_3696 0.38 -0.4
3,898,958 - HP15_3696 0.38 +0.2
3,898,963 + HP15_3696 0.38 -0.5
3,899,061 - HP15_3696 0.43 -0.4
3,899,061 - HP15_3696 0.43 -0.3
3,899,061 - HP15_3696 0.43 +0.6
3,899,084 - HP15_3696 0.44 -0.1
3,899,149 - HP15_3696 0.47 +0.3
3,899,158 + HP15_3696 0.48 +0.2
3,899,158 + HP15_3696 0.48 -1.1
3,899,158 + HP15_3696 0.48 -0.0
3,899,158 + HP15_3696 0.48 -0.3
3,899,166 - HP15_3696 0.48 -0.7
3,899,166 - HP15_3696 0.48 +0.3
3,899,218 - HP15_3696 0.51 +0.8
3,899,297 - HP15_3696 0.55 -1.0
3,899,356 + HP15_3696 0.57 -0.9
3,899,364 - HP15_3696 0.58 -0.4
3,899,364 - HP15_3696 0.58 +0.3
3,899,366 + HP15_3696 0.58 -1.4
3,899,457 - HP15_3696 0.62 -0.7
3,899,516 - HP15_3696 0.65 -2.3
3,899,516 - HP15_3696 0.65 -2.5
3,899,600 + HP15_3696 0.69 +0.1
3,899,707 + HP15_3696 0.74 -0.8
3,899,710 - HP15_3696 0.74 -1.3
3,899,732 + HP15_3696 0.76 -0.3
3,899,732 + HP15_3696 0.76 -0.6
3,899,830 + HP15_3696 0.80 +0.4
3,899,888 + HP15_3696 0.83 +1.8
3,899,891 - HP15_3696 0.83 -0.8
3,899,961 + HP15_3696 0.87 -0.8
3,900,025 + HP15_3696 0.90 -2.5
3,900,025 + HP15_3696 0.90 -0.0
3,900,034 - +0.2
3,900,079 + -1.7
3,900,097 - -0.1
3,900,103 - -3.3
3,900,155 - +1.0
3,900,217 + -0.5
3,900,251 + +0.8
3,900,251 + +0.2
3,900,251 + +0.3
3,900,259 - +1.1
3,900,415 - -0.5
3,900,472 + -1.0
3,900,472 + -2.0
3,900,488 - +0.3
3,900,508 - HP15_3697 0.11 -0.1
3,900,561 - HP15_3697 0.17 +0.5
3,900,592 - HP15_3697 0.20 -1.3
3,900,592 - HP15_3697 0.20 -1.4
3,900,758 - HP15_3697 0.38 +0.8
3,900,771 + HP15_3697 0.39 -0.9
3,900,794 - HP15_3697 0.42 +1.4
3,900,798 - HP15_3697 0.42 -0.5
3,900,798 - HP15_3697 0.42 -0.4
3,900,888 + HP15_3697 0.52 +1.3
3,900,979 + HP15_3697 0.62 +0.5
3,901,003 + HP15_3697 0.64 +0.0
3,901,044 - HP15_3697 0.69 +2.0
3,901,170 + HP15_3697 0.82 +0.4

Or see this region's nucleotide sequence