Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3605 and HP15_3606 are separated by 235 nucleotides HP15_3606 and HP15_3607 are separated by 184 nucleotides
HP15_3605: HP15_3605 - conserved hypothetical protein, at 3,800,136 to 3,801,955
_3605
HP15_3606: HP15_3606 - abortive infection protein-like protein, at 3,802,191 to 3,802,613
_3606
HP15_3607: HP15_3607 - DEAD/DEAH box helicase domain protein, at 3,802,798 to 3,804,120
_3607
Position (kb)
3802
3803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3801.206 kb on + strand, within HP15_3605 at 3801.243 kb on - strand, within HP15_3605 at 3801.319 kb on + strand, within HP15_3605 at 3801.326 kb on - strand, within HP15_3605 at 3801.412 kb on - strand, within HP15_3605 at 3801.450 kb on - strand, within HP15_3605 at 3801.541 kb on + strand, within HP15_3605 at 3801.541 kb on + strand, within HP15_3605 at 3801.549 kb on - strand, within HP15_3605 at 3801.549 kb on - strand, within HP15_3605 at 3801.608 kb on - strand, within HP15_3605 at 3801.661 kb on - strand, within HP15_3605 at 3801.780 kb on + strand at 3801.798 kb on - strand at 3801.858 kb on + strand at 3801.909 kb on + strand at 3801.966 kb on - strand at 3801.971 kb on - strand at 3802.085 kb on - strand at 3802.214 kb on - strand at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.257 kb on + strand, within HP15_3606 at 3802.262 kb on + strand, within HP15_3606 at 3802.265 kb on - strand, within HP15_3606 at 3802.265 kb on - strand, within HP15_3606 at 3802.392 kb on + strand, within HP15_3606 at 3802.418 kb on - strand, within HP15_3606 at 3802.435 kb on + strand, within HP15_3606 at 3802.443 kb on - strand, within HP15_3606 at 3802.490 kb on + strand, within HP15_3606 at 3802.609 kb on + strand at 3802.617 kb on - strand at 3802.629 kb on + strand at 3802.629 kb on + strand at 3802.637 kb on - strand at 3802.802 kb on - strand at 3802.805 kb on + strand at 3802.833 kb on + strand at 3802.961 kb on + strand, within HP15_3607 at 3802.961 kb on + strand, within HP15_3607 at 3802.964 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.969 kb on - strand, within HP15_3607 at 3802.998 kb on + strand, within HP15_3607 at 3802.998 kb on + strand, within HP15_3607 at 3803.006 kb on - strand, within HP15_3607 at 3803.078 kb on + strand, within HP15_3607 at 3803.164 kb on - strand, within HP15_3607 at 3803.164 kb on - strand, within HP15_3607 at 3803.166 kb on + strand, within HP15_3607 at 3803.174 kb on - strand, within HP15_3607 at 3803.242 kb on + strand, within HP15_3607 at 3803.250 kb on - strand, within HP15_3607 at 3803.285 kb on + strand, within HP15_3607 at 3803.293 kb on - strand, within HP15_3607 at 3803.313 kb on - strand, within HP15_3607 at 3803.399 kb on - strand, within HP15_3607 at 3803.432 kb on + strand, within HP15_3607 at 3803.511 kb on + strand, within HP15_3607 at 3803.531 kb on + strand, within HP15_3607
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,801,206 + HP15_3605 0.59 -0.7 3,801,243 - HP15_3605 0.61 -1.7 3,801,319 + HP15_3605 0.65 +0.7 3,801,326 - HP15_3605 0.65 -0.5 3,801,412 - HP15_3605 0.70 -0.4 3,801,450 - HP15_3605 0.72 -1.5 3,801,541 + HP15_3605 0.77 -0.2 3,801,541 + HP15_3605 0.77 -1.1 3,801,549 - HP15_3605 0.78 -0.8 3,801,549 - HP15_3605 0.78 -1.7 3,801,608 - HP15_3605 0.81 -1.2 3,801,661 - HP15_3605 0.84 -0.8 3,801,780 + -0.3 3,801,798 - -0.4 3,801,858 + -0.1 3,801,909 + -2.5 3,801,966 - -1.4 3,801,971 - -0.9 3,802,085 - +0.3 3,802,214 - +0.8 3,802,257 + HP15_3606 0.16 -1.6 3,802,257 + HP15_3606 0.16 -1.4 3,802,257 + HP15_3606 0.16 -1.5 3,802,257 + HP15_3606 0.16 +0.8 3,802,257 + HP15_3606 0.16 -0.5 3,802,257 + HP15_3606 0.16 -0.2 3,802,262 + HP15_3606 0.17 +1.3 3,802,265 - HP15_3606 0.17 -0.3 3,802,265 - HP15_3606 0.17 -1.9 3,802,392 + HP15_3606 0.48 -0.1 3,802,418 - HP15_3606 0.54 -1.3 3,802,435 + HP15_3606 0.58 +1.3 3,802,443 - HP15_3606 0.60 +1.1 3,802,490 + HP15_3606 0.71 -1.1 3,802,609 + -2.3 3,802,617 - +1.3 3,802,629 + +2.0 3,802,629 + -0.5 3,802,637 - -2.3 3,802,802 - -0.2 3,802,805 + -0.6 3,802,833 + -0.8 3,802,961 + HP15_3607 0.12 -0.9 3,802,961 + HP15_3607 0.12 -0.6 3,802,964 - HP15_3607 0.13 -0.8 3,802,969 - HP15_3607 0.13 -0.3 3,802,969 - HP15_3607 0.13 +0.5 3,802,969 - HP15_3607 0.13 +1.7 3,802,998 + HP15_3607 0.15 +0.9 3,802,998 + HP15_3607 0.15 +0.2 3,803,006 - HP15_3607 0.16 -0.5 3,803,078 + HP15_3607 0.21 -1.3 3,803,164 - HP15_3607 0.28 +0.3 3,803,164 - HP15_3607 0.28 +0.3 3,803,166 + HP15_3607 0.28 +1.0 3,803,174 - HP15_3607 0.28 -0.4 3,803,242 + HP15_3607 0.34 -3.1 3,803,250 - HP15_3607 0.34 +0.3 3,803,285 + HP15_3607 0.37 -1.2 3,803,293 - HP15_3607 0.37 +0.9 3,803,313 - HP15_3607 0.39 +0.5 3,803,399 - HP15_3607 0.45 -1.6 3,803,432 + HP15_3607 0.48 -0.1 3,803,511 + HP15_3607 0.54 +0.3 3,803,531 + HP15_3607 0.55 +0.7
Or see this region's nucleotide sequence