Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3440

Experiment: nitrite (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite (N)
3,609,271	-				+2.0
3,609,271	-				+1.3
3,609,505	-		Psest_3439	0.31	+0.2
3,609,505	-		Psest_3439	0.31	-1.7
3,609,505	-		Psest_3439	0.31	-1.6
3,609,505	-		Psest_3439	0.31	+1.0
3,609,570	+		Psest_3439	0.40	-0.9
3,609,571	-		Psest_3439	0.40	+0.8
3,609,598	+		Psest_3439	0.43	+0.2
3,609,600	+		Psest_3439	0.43	-0.6
3,609,600	+		Psest_3439	0.43	-1.3
3,609,600	+		Psest_3439	0.43	+1.0
3,609,601	-		Psest_3439	0.44	+1.4
3,609,601	-		Psest_3439	0.44	+1.5
3,609,601	-		Psest_3439	0.44	+0.4
3,609,601	-		Psest_3439	0.44	+1.8
3,609,601	-		Psest_3439	0.44	+0.7
3,609,867	+		Psest_3439	0.78	+1.0
3,609,867	+		Psest_3439	0.78	+0.1
3,609,884	-		Psest_3439	0.80	+0.2
3,610,039	+				+0.0
3,610,039	+				+0.7
3,610,039	+				+0.9
3,610,039	+				+0.1
3,610,040	-				-0.6
3,610,040	-				-1.0
3,610,040	-				+2.0
3,610,040	-				-0.1
3,610,040	-				+0.3
3,610,098	+				-1.0
3,610,098	+				-1.3
3,610,099	-				-0.3
3,610,140	+				+1.2
3,610,141	-				-1.3
3,610,232	-				-0.0
3,610,232	-				+0.1
3,610,404	+		Psest_3440	0.24	+0.3
3,610,404	+		Psest_3440	0.24	+1.3
3,610,404	+		Psest_3440	0.24	+0.1
3,610,404	+		Psest_3440	0.24	-0.4
3,610,404	+		Psest_3440	0.24	+0.6
3,610,405	-		Psest_3440	0.24	+0.3
3,610,405	-		Psest_3440	0.24	-1.2
3,610,405	-		Psest_3440	0.24	-1.6
3,610,405	-		Psest_3440	0.24	+0.3
3,610,612	+		Psest_3440	0.42	+0.5
3,610,612	+		Psest_3440	0.42	-0.3
3,610,612	+		Psest_3440	0.42	+0.1
3,610,612	+		Psest_3440	0.42	+0.3
3,610,612	+		Psest_3440	0.42	-1.0
3,610,612	+		Psest_3440	0.42	-0.6
3,610,612	+		Psest_3440	0.42	-1.8
3,610,612	+		Psest_3440	0.42	-0.2
3,610,612	+		Psest_3440	0.42	+0.1
3,610,612	+		Psest_3440	0.42	+1.2
3,610,613	-		Psest_3440	0.42	+0.2
3,610,613	-		Psest_3440	0.42	+0.4
3,610,613	-		Psest_3440	0.42	+0.1
3,610,613	-		Psest_3440	0.42	+0.7
3,610,613	-		Psest_3440	0.42	-0.3
3,610,879	+		Psest_3440	0.66	+1.4
3,610,927	+		Psest_3440	0.70	+0.0
3,610,927	+		Psest_3440	0.70	+0.2
3,610,927	+		Psest_3440	0.70	+0.3
3,610,927	+		Psest_3440	0.70	+2.4
3,610,927	+		Psest_3440	0.70	+1.7
3,610,927	+		Psest_3440	0.70	-1.5
3,610,927	+		Psest_3440	0.70	+0.5
3,610,927	+		Psest_3440	0.70	+2.1
3,610,927	+		Psest_3440	0.70	+0.9
3,610,927	+		Psest_3440	0.70	+1.1
3,610,927	+		Psest_3440	0.70	+0.7
3,610,927	+		Psest_3440	0.70	+0.8
3,610,927	+		Psest_3440	0.70	+1.1
3,610,928	-		Psest_3440	0.70	+1.3
3,610,928	-		Psest_3440	0.70	+0.1
3,610,928	-		Psest_3440	0.70	-0.6
3,610,928	-		Psest_3440	0.70	+1.0
3,610,928	-		Psest_3440	0.70	+0.8
3,610,928	-		Psest_3440	0.70	+0.4
3,610,928	-		Psest_3440	0.70	+0.1
3,610,928	-		Psest_3440	0.70	+0.8
3,610,928	-		Psest_3440	0.70	+2.0
3,610,928	-		Psest_3440	0.70	-0.8
3,610,928	-		Psest_3440	0.70	+1.3
3,610,928	-		Psest_3440	0.70	+0.7
3,611,144	+		Psest_3440	0.89	-0.3
3,611,144	+		Psest_3440	0.89	+0.7
3,611,145	-		Psest_3440	0.90	-0.3
3,611,261	-				-0.4
3,611,491	+		Psest_3441	0.22	+0.3
3,611,617	+		Psest_3441	0.34	+1.2
3,611,618	-		Psest_3441	0.34	+1.0
3,611,618	-		Psest_3441	0.34	+0.5
3,611,621	-		Psest_3441	0.34	+0.3
3,611,629	+		Psest_3441	0.35	-0.4
3,611,629	+		Psest_3441	0.35	-0.8
3,611,629	+		Psest_3441	0.35	+0.7
3,611,630	-		Psest_3441	0.35	-0.7
3,611,783	-		Psest_3441	0.50	-0.2
3,611,783	-		Psest_3441	0.50	+0.3
3,611,784	+		Psest_3441	0.50	+0.9
3,611,784	+		Psest_3441	0.50	+0.9
3,611,784	+		Psest_3441	0.50	+0.1
3,611,784	+		Psest_3441	0.50	+1.6
3,611,784	+		Psest_3441	0.50	+1.2
3,611,784	+		Psest_3441	0.50	+0.4
3,611,784	+		Psest_3441	0.50	+1.6
3,611,784	+		Psest_3441	0.50	+1.3
3,611,784	+		Psest_3441	0.50	+0.6
3,611,784	+		Psest_3441	0.50	-1.3
3,611,784	+		Psest_3441	0.50	+0.4
3,611,784	+		Psest_3441	0.50	+0.7
3,611,785	-		Psest_3441	0.50	-1.0
3,611,785	-		Psest_3441	0.50	+1.4
3,611,785	-		Psest_3441	0.50	+0.7
3,611,785	-		Psest_3441	0.50	-0.1
3,611,785	-		Psest_3441	0.50	+0.1
3,611,785	-		Psest_3441	0.50	+0.5
3,611,785	-		Psest_3441	0.50	-1.7
3,611,785	-		Psest_3441	0.50	+0.2
3,611,785	-		Psest_3441	0.50	-1.1
3,611,785	-		Psest_3441	0.50	+0.1
3,611,785	-		Psest_3441	0.50	-1.7
3,611,785	-		Psest_3441	0.50	-1.0
3,611,785	-		Psest_3441	0.50	-0.2
3,611,785	-		Psest_3441	0.50	+1.3
3,611,785	-		Psest_3441	0.50	-0.3
3,611,785	-		Psest_3441	0.50	-0.1
3,611,951	-		Psest_3441	0.66	+0.3
3,612,060	+		Psest_3441	0.76	-0.9
3,612,061	-		Psest_3441	0.76	-2.3
3,612,103	+		Psest_3441	0.80	-2.2
3,612,158	+		Psest_3441	0.86	-2.5
3,612,159	-		Psest_3441	0.86	-1.1
3,612,159	-		Psest_3441	0.86	-0.3
3,612,159	-		Psest_3441	0.86	+0.8
3,612,159	-		Psest_3441	0.86	-0.7
3,612,159	-		Psest_3441	0.86	+1.8
3,612,160	+		Psest_3441	0.86	+1.2
3,612,160	+		Psest_3441	0.86	+0.6
3,612,160	+		Psest_3441	0.86	-2.3
3,612,160	+		Psest_3441	0.86	+1.0
3,612,160	+		Psest_3441	0.86	-0.9
3,612,161	-		Psest_3441	0.86	+0.9
3,612,161	-		Psest_3441	0.86	-1.3
3,612,161	-		Psest_3441	0.86	-0.7
3,612,161	-		Psest_3441	0.86	-0.9
3,612,161	-		Psest_3441	0.86	+0.3
3,612,161	-		Psest_3441	0.86	-2.4
3,612,161	-		Psest_3441	0.86	-1.9
3,612,161	-		Psest_3441	0.86	-0.5