Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3314 and HP15_3315 are separated by 205 nucleotides HP15_3315 and HP15_3316 are separated by 26 nucleotides
HP15_3314: HP15_3314 - N-acetyllutamate synthase, at 3,473,698 to 3,475,005
_3314
HP15_3315: HP15_3315 - acetylornithine deacetylase (ArgE), at 3,475,211 to 3,476,380
_3315
HP15_3316: HP15_3316 - acetylornithine deacetylase, at 3,476,407 to 3,477,657
_3316
Position (kb)
3475
3476
3477 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3474.238 kb on + strand, within HP15_3314 at 3474.267 kb on - strand, within HP15_3314 at 3474.456 kb on + strand, within HP15_3314 at 3474.641 kb on - strand, within HP15_3314 at 3474.672 kb on - strand, within HP15_3314 at 3474.846 kb on + strand, within HP15_3314 at 3474.854 kb on - strand, within HP15_3314 at 3474.856 kb on + strand, within HP15_3314 at 3475.072 kb on + strand at 3475.169 kb on + strand at 3475.258 kb on + strand at 3475.271 kb on - strand at 3475.271 kb on - strand at 3475.322 kb on + strand at 3475.416 kb on + strand, within HP15_3315 at 3475.416 kb on + strand, within HP15_3315 at 3475.416 kb on + strand, within HP15_3315 at 3475.424 kb on - strand, within HP15_3315 at 3475.451 kb on - strand, within HP15_3315 at 3475.463 kb on + strand, within HP15_3315 at 3475.492 kb on + strand, within HP15_3315 at 3475.521 kb on - strand, within HP15_3315 at 3475.583 kb on - strand, within HP15_3315 at 3475.604 kb on + strand, within HP15_3315 at 3475.648 kb on + strand, within HP15_3315 at 3475.765 kb on - strand, within HP15_3315 at 3475.878 kb on + strand, within HP15_3315 at 3475.886 kb on - strand, within HP15_3315 at 3475.915 kb on + strand, within HP15_3315 at 3475.953 kb on + strand, within HP15_3315 at 3476.079 kb on - strand, within HP15_3315 at 3476.079 kb on - strand, within HP15_3315 at 3476.192 kb on + strand, within HP15_3315 at 3476.249 kb on + strand, within HP15_3315 at 3476.255 kb on + strand, within HP15_3315 at 3476.306 kb on + strand at 3476.455 kb on + strand at 3476.455 kb on + strand at 3476.465 kb on + strand at 3476.670 kb on + strand, within HP15_3316 at 3476.670 kb on + strand, within HP15_3316 at 3476.678 kb on - strand, within HP15_3316 at 3476.678 kb on - strand, within HP15_3316 at 3476.724 kb on + strand, within HP15_3316 at 3476.845 kb on - strand, within HP15_3316 at 3477.086 kb on + strand, within HP15_3316 at 3477.086 kb on + strand, within HP15_3316 at 3477.104 kb on - strand, within HP15_3316 at 3477.112 kb on + strand, within HP15_3316 at 3477.123 kb on - strand, within HP15_3316 at 3477.204 kb on - strand, within HP15_3316 at 3477.204 kb on - strand, within HP15_3316 at 3477.236 kb on - strand, within HP15_3316 at 3477.323 kb on - strand, within HP15_3316 at 3477.323 kb on - strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.327 kb on + strand, within HP15_3316 at 3477.335 kb on - strand, within HP15_3316 at 3477.335 kb on - strand, within HP15_3316 at 3477.350 kb on + strand, within HP15_3316
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,474,238 + HP15_3314 0.41 -0.9 3,474,267 - HP15_3314 0.44 -0.4 3,474,456 + HP15_3314 0.58 -0.3 3,474,641 - HP15_3314 0.72 -0.5 3,474,672 - HP15_3314 0.74 -0.6 3,474,846 + HP15_3314 0.88 +0.8 3,474,854 - HP15_3314 0.88 +1.0 3,474,856 + HP15_3314 0.89 -0.0 3,475,072 + -1.0 3,475,169 + +0.1 3,475,258 + -3.3 3,475,271 - -1.3 3,475,271 - -2.1 3,475,322 + +1.2 3,475,416 + HP15_3315 0.18 -0.7 3,475,416 + HP15_3315 0.18 -2.2 3,475,416 + HP15_3315 0.18 +3.1 3,475,424 - HP15_3315 0.18 -1.1 3,475,451 - HP15_3315 0.21 -0.1 3,475,463 + HP15_3315 0.22 +0.4 3,475,492 + HP15_3315 0.24 +0.7 3,475,521 - HP15_3315 0.26 +1.3 3,475,583 - HP15_3315 0.32 -1.8 3,475,604 + HP15_3315 0.34 -1.0 3,475,648 + HP15_3315 0.37 +0.2 3,475,765 - HP15_3315 0.47 -1.4 3,475,878 + HP15_3315 0.57 +1.2 3,475,886 - HP15_3315 0.58 +1.1 3,475,915 + HP15_3315 0.60 -0.4 3,475,953 + HP15_3315 0.63 -0.9 3,476,079 - HP15_3315 0.74 -1.2 3,476,079 - HP15_3315 0.74 +0.0 3,476,192 + HP15_3315 0.84 -1.6 3,476,249 + HP15_3315 0.89 -0.8 3,476,255 + HP15_3315 0.89 +0.4 3,476,306 + -0.5 3,476,455 + -1.7 3,476,455 + +0.6 3,476,465 + +0.9 3,476,670 + HP15_3316 0.21 -0.2 3,476,670 + HP15_3316 0.21 -0.1 3,476,678 - HP15_3316 0.22 -0.4 3,476,678 - HP15_3316 0.22 +2.0 3,476,724 + HP15_3316 0.25 -1.4 3,476,845 - HP15_3316 0.35 +0.3 3,477,086 + HP15_3316 0.54 -1.5 3,477,086 + HP15_3316 0.54 -0.3 3,477,104 - HP15_3316 0.56 +0.2 3,477,112 + HP15_3316 0.56 +2.2 3,477,123 - HP15_3316 0.57 +0.6 3,477,204 - HP15_3316 0.64 +0.8 3,477,204 - HP15_3316 0.64 -1.4 3,477,236 - HP15_3316 0.66 -1.1 3,477,323 - HP15_3316 0.73 +0.3 3,477,323 - HP15_3316 0.73 -3.3 3,477,327 + HP15_3316 0.74 -0.5 3,477,327 + HP15_3316 0.74 -0.2 3,477,327 + HP15_3316 0.74 +1.2 3,477,327 + HP15_3316 0.74 -1.3 3,477,327 + HP15_3316 0.74 -3.0 3,477,327 + HP15_3316 0.74 -0.4 3,477,335 - HP15_3316 0.74 -0.8 3,477,335 - HP15_3316 0.74 -3.6 3,477,350 + HP15_3316 0.75 +0.0
Or see this region's nucleotide sequence