Experiment: m.b. Nalidixic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3240 and HP15_3241 are separated by 145 nucleotides HP15_3241 and HP15_3242 are separated by 22 nucleotides
HP15_3240: HP15_3240 - sulfate permease family protein, at 3,394,407 to 3,396,125
_3240
HP15_3241: HP15_3241 - thioredoxin-like protein, at 3,396,271 to 3,396,450
_3241
HP15_3242: HP15_3242 - ferric uptake regulator, CjrA, predicted, at 3,396,473 to 3,397,483
_3242
Position (kb)
3396
3397 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3395.337 kb on - strand, within HP15_3240 at 3395.557 kb on + strand, within HP15_3240 at 3395.565 kb on - strand, within HP15_3240 at 3395.587 kb on - strand, within HP15_3240 at 3395.639 kb on + strand, within HP15_3240 at 3395.720 kb on - strand, within HP15_3240 at 3395.843 kb on + strand, within HP15_3240 at 3395.862 kb on - strand, within HP15_3240 at 3395.872 kb on - strand, within HP15_3240 at 3395.882 kb on - strand, within HP15_3240 at 3395.984 kb on + strand at 3396.024 kb on - strand at 3396.133 kb on + strand at 3396.141 kb on - strand at 3396.262 kb on - strand at 3396.526 kb on - strand at 3396.570 kb on + strand at 3396.594 kb on + strand, within HP15_3242 at 3396.616 kb on + strand, within HP15_3242 at 3396.704 kb on + strand, within HP15_3242 at 3396.705 kb on + strand, within HP15_3242 at 3396.712 kb on - strand, within HP15_3242 at 3396.721 kb on + strand, within HP15_3242 at 3396.771 kb on + strand, within HP15_3242 at 3396.779 kb on - strand, within HP15_3242 at 3396.781 kb on + strand, within HP15_3242 at 3396.789 kb on - strand, within HP15_3242 at 3396.980 kb on + strand, within HP15_3242 at 3396.988 kb on - strand, within HP15_3242 at 3397.011 kb on + strand, within HP15_3242 at 3397.011 kb on + strand, within HP15_3242 at 3397.011 kb on + strand, within HP15_3242 at 3397.019 kb on - strand, within HP15_3242 at 3397.050 kb on + strand, within HP15_3242 at 3397.219 kb on + strand, within HP15_3242 at 3397.227 kb on - strand, within HP15_3242 at 3397.318 kb on + strand, within HP15_3242 at 3397.318 kb on - strand, within HP15_3242 at 3397.346 kb on + strand, within HP15_3242 at 3397.349 kb on - strand, within HP15_3242 at 3397.363 kb on + strand, within HP15_3242 at 3397.391 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.016 mg/ml remove 3,395,337 - HP15_3240 0.54 -1.0 3,395,557 + HP15_3240 0.67 +1.2 3,395,565 - HP15_3240 0.67 -0.3 3,395,587 - HP15_3240 0.69 +1.8 3,395,639 + HP15_3240 0.72 +0.3 3,395,720 - HP15_3240 0.76 +0.8 3,395,843 + HP15_3240 0.84 -0.3 3,395,862 - HP15_3240 0.85 -1.0 3,395,872 - HP15_3240 0.85 -0.6 3,395,882 - HP15_3240 0.86 +0.4 3,395,984 + -1.3 3,396,024 - -1.0 3,396,133 + -2.6 3,396,141 - +0.5 3,396,262 - +4.1 3,396,526 - +0.2 3,396,570 + -1.1 3,396,594 + HP15_3242 0.12 +0.2 3,396,616 + HP15_3242 0.14 -0.0 3,396,704 + HP15_3242 0.23 +0.2 3,396,705 + HP15_3242 0.23 -0.3 3,396,712 - HP15_3242 0.24 +1.7 3,396,721 + HP15_3242 0.25 +3.1 3,396,771 + HP15_3242 0.29 -0.3 3,396,779 - HP15_3242 0.30 -0.4 3,396,781 + HP15_3242 0.30 -0.3 3,396,789 - HP15_3242 0.31 -2.5 3,396,980 + HP15_3242 0.50 +1.2 3,396,988 - HP15_3242 0.51 +0.0 3,397,011 + HP15_3242 0.53 -0.3 3,397,011 + HP15_3242 0.53 -0.3 3,397,011 + HP15_3242 0.53 +0.7 3,397,019 - HP15_3242 0.54 -2.1 3,397,050 + HP15_3242 0.57 -0.7 3,397,219 + HP15_3242 0.74 +0.0 3,397,227 - HP15_3242 0.75 -1.2 3,397,318 + HP15_3242 0.84 -0.1 3,397,318 - HP15_3242 0.84 -3.5 3,397,346 + HP15_3242 0.86 -0.6 3,397,349 - HP15_3242 0.87 +0.2 3,397,363 + HP15_3242 0.88 -0.3 3,397,391 - +1.2
Or see this region's nucleotide sequence